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Yeast Phenotype (YP): metabolism and growth

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Root: YP Hierarchy (yeast phenotype from Ascomycete phenotype ontology)

Shortest distance to current term (+ for parents, - for children) YP term [YP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   observable [APO:0000017] <7>
0:   metabolism and growth [APO:0000094] <13>(76|72) (77|35|7)
- 1:   nutrient utilization [APO:0000096] <9>(21|18) (21|8|1)
- 1:   vegetative growth [APO:0000106] <3>(12|16) (12|9|1)
- 1:   anaerobic metabolism [APO:0000210] <1>(0|0) (0|0|0)
- 1:   RNA accumulation [APO:0000224](2|0) (2|1|0)
- 1:   RNA modification [APO:0000271](2|1) (2|0|0)
- 1:   chemical compound accumulation [APO:0000095](15|16) (15|8|1)
- 1:   chemical compound excretion [APO:0000222](1|2) (1|0|0)
- 1:   protein activity [APO:0000022](0|0) (0|0|0)
- 1:   protein/peptide accumulation [APO:0000149](2|3) (2|2|0)
- 1:   protein/peptide distribution [APO:0000209](2|2) (3|0|0)
- 1:   protein/peptide modification [APO:0000131](2|4) (2|1|0)
- 1:   redox state [APO:0000218](0|0) (0|0|0)
- 1:   secondary metabolite production [APO:0000292](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
HMA, heavy metal-associated domain0Direct
Cupredoxins0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein S20Direct
Ribosomal protein S80Direct
Prefoldin0Direct
Ammonium transporter0Direct
PAP/OAS1 substrate-binding domain0Direct
YVTN repeat-like/Quinoprotein amine dehydrogenase0Direct
Ribosomal protein L60Direct
Formate/glycerate dehydrogenase catalytic domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
CheY-like0Direct
SAICAR synthase-like0Direct
HSP40/DnaJ peptide-binding domain0Direct
Pseudouridine synthase0Direct
Seven-hairpin glycosidases0Direct
F1F0 ATP synthase subunit C0Direct
Ribosomal protein L130Direct
Cytochrome c0Direct
Fe,Mn superoxide dismutase (SOD), C-terminal domain0Direct
beta-sandwich domain of Sec23/240Direct
YAP1 redox domain0Direct
Tubulin C-terminal domain-like0Direct
Ribosomal L11/L12e N-terminal domain0Direct
HLH, helix-loop-helix DNA-binding domain0Direct
FtsH protease domain-like0Direct
Ras GEF0Direct
GYF domain0Direct
Phospholipase D/nuclease0Direct
FAD-binding/transporter-associated domain-like0Direct
HRDC-like0Direct
FAD-linked oxidases, C-terminal domain0Direct
S13-like H2TH domain0Direct
Tubulin nucleotide-binding domain-like0Direct
Helical domain of Sec23/240Direct
Periplasmic binding protein-like II0Direct
The spindle assembly checkpoint protein mad20Direct
AMPKBI-like0Direct
Endosomal sorting complex assembly domain0Direct
Nucleotide-binding domain0Direct
Subtilisin-like0Direct
DnaJ/Hsp40 cysteine-rich domain0Direct
Actin depolymerizing proteins0Direct
Chromo domain-like0Direct
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain0Direct
SAP domain0Direct
SAM/Pointed domain0Direct
Ribosomal protein L140Direct
tRNA-binding arm0Direct
Methylglyoxal synthase-like0Direct
DNA repair protein MutS, domain II0Direct
Ribosomal protein L11, C-terminal domain0Direct
FAD-linked oxidoreductase0Direct
RNase III domain-like0Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0Direct
PLC-like phosphodiesterases0Direct
DNA-glycosylase0Direct
PLP-binding barrel0Direct
4'-phosphopantetheinyl transferase0Direct
Mitochondrial carrier0.00005139Direct
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain0.03513Inherited
EF-G C-terminal domain-like0.1352Inherited
Protein kinase-like (PK-like)0.1826Inherited
Ubiquitin-like0.1854Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.2032Inherited
PreATP-grasp domain0.2097Inherited
TK C-terminal domain-like0.252Inherited
Glutathione synthetase ATP-binding domain-like0.3189Inherited
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.4224Inherited
ARM repeat0.4541Inherited
Nucleotidyltransferase0.5144Inherited
Class II aaRS and biotin synthetases0.5217Inherited
NAD(P)-binding Rossmann-fold domains0.7306Inherited
MFS general substrate transporter0.7796Inherited
Nucleotidylyl transferase0.9548Inherited


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Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Ras GEF0Direct
Serine carboxypeptidase-like0Direct
Ribosomal protein L130Direct
Formate/glycerate dehydrogenases, NAD-domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Vacuolar sorting protein domain0Direct
Ribosomal protein S20Direct
NAD kinase-like0Direct
CheY-related0Direct
Ribosomal protein S130Direct
Myb/SANT domain0Direct
Ran-binding domain0Direct
RecA protein-like (ATPase-domain)0Direct
Adenosine/AMP deaminase0Direct
RNB domain-like0Direct
SAP domain0Direct
GYF domain0Direct
HSP40/DnaJ peptide-binding domain0Direct
Multidomain cupredoxins0Direct
Ribosomal protein L60Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Tryptophan biosynthesis enzymes0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
YAP1 redox domain0Direct
FtsH protease domain-like0Direct
Tetrahydrofolate dehydrogenase/cyclohydrolase0Direct
Pseudouridine synthase RsuA/RluD0Direct
HMA, heavy metal-associated domain0Direct
La domain0Direct
Ribosomal protein L140Direct
F1F0 ATP synthase subunit C0Direct
beta-sandwich domain of Sec23/240Direct
Ribosomal protein L11, C-terminal domain0Direct
Ammonium transporter0Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0Direct
Ribosomal L11/L12e N-terminal domain0Direct
Subtilases0Direct
Pseudouridine synthase I TruA0Direct
Helical domain of Sec23/240Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0Direct
Glucose 6-phosphate dehydrogenase-like0Direct
Ribosomal protein L14e0Direct
FAD-linked oxidases, N-terminal domain0Direct
DJ-1/PfpI0Direct
Ribosomal protein S80Direct
Class I alpha-1;2-mannosidase, catalytic domain0Direct
C-terminal domain of ribosomal protein L20Direct
Cofilin-like0Direct
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain0Direct
Formate/glycerate dehydrogenases, substrate-binding domain0Direct
HLH, helix-loop-helix DNA-binding domain0Direct
AMPKBI-like0Direct
Prefoldin0Direct
Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain0Direct
DnaJ/Hsp40 cysteine-rich domain0Direct
FabD-like0Direct
Phosphate binding protein-like0Direct
SAM (sterile alpha motif) domain0Direct
Mitochondrial carrier0.0001964Direct
Elongation factors0.02229Inherited
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain0.03159Inherited
EF-G/eEF-2 domains III and V0.1222Inherited
DNA polymerase I0.2278Inherited
FYVE, a phosphatidylinositol-3-phosphate binding domain0.2278Inherited
BC N-terminal domain-like0.2501Inherited
BC ATP-binding domain-like0.2501Inherited
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.3971Inherited
Protein kinases, catalytic subunit0.4557Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.5193Inherited
Ubiquitin-related0.5552Inherited
Class I glutamine amidotransferases (GAT)0.6317Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.9321Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain0Direct
Tubulin C-terminal domain-like0Direct
DNA-glycosylase0Direct
Ras GEF0Direct
SAM/Pointed domain0Direct
DNA repair protein MutS, domain II0Direct
GYF domain0Direct
YAP1 redox domain0Direct
SAP domain0Direct
Ribosomal L11/L12e N-terminal domain0Direct
Ribosomal protein L130Direct
Phospholipase D/nuclease0Direct
Chromo domain-like0Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0Direct
FtsH protease domain-like0Direct
Helical domain of Sec23/240Direct
FAD-binding/transporter-associated domain-like0Direct
beta-sandwich domain of Sec23/240Direct
CheY-like0Direct
F1F0 ATP synthase subunit C0Direct
Cupredoxins0Direct
Endosomal sorting complex assembly domain0Direct
HRDC-like0Direct
FAD-linked oxidases, C-terminal domain0Direct
Ribosomal protein L140Direct
Methylglyoxal synthase-like0Direct
RNase III domain-like0Direct
YVTN repeat-like/Quinoprotein amine dehydrogenase0Direct
HSP40/DnaJ peptide-binding domain0Direct
Subtilisin-like0Direct
FAD-linked oxidoreductase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
S13-like H2TH domain0Direct
Ammonium transporter0Direct
Seven-hairpin glycosidases0Direct
Formate/glycerate dehydrogenase catalytic domain-like0Direct
Actin depolymerizing proteins0Direct
AMPKBI-like0Direct
Nucleotide-binding domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
PLP-binding barrel0Direct
Ribosomal protein S20Direct
4'-phosphopantetheinyl transferase0Direct
DnaJ/Hsp40 cysteine-rich domain0Direct
HLH, helix-loop-helix DNA-binding domain0Direct
Fe,Mn superoxide dismutase (SOD), C-terminal domain0Direct
Ribosomal protein S80Direct
HMA, heavy metal-associated domain0Direct
SAICAR synthase-like0Direct
Pseudouridine synthase0Direct
PLC-like phosphodiesterases0Direct
PAP/OAS1 substrate-binding domain0Direct
The spindle assembly checkpoint protein mad20Direct
Cytochrome c0Direct
Prefoldin0Direct
Ribosomal protein L60Direct
tRNA-binding arm0Direct
Ribosomal protein L11, C-terminal domain0Direct
Tubulin nucleotide-binding domain-like0Direct
Periplasmic binding protein-like II0Direct
Mitochondrial carrier0.0000421Direct
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain0.03076Inherited
EF-G C-terminal domain-like0.1234Inherited
Protein kinase-like (PK-like)0.169Inherited
Ubiquitin-like0.1719Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.1894Inherited
PreATP-grasp domain0.1956Inherited
TK C-terminal domain-like0.237Inherited
Glutathione synthetase ATP-binding domain-like0.3031Inherited
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.4041Inherited
ARM repeat0.4368Inherited
Nucleotidyltransferase0.4985Inherited
Class II aaRS and biotin synthetases0.5058Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.6046Inherited
NAD(P)-binding Rossmann-fold domains0.7193Inherited
MFS general substrate transporter0.7696Inherited
Nucleotidylyl transferase0.9496Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49493,49493
  • 49493 - HSP40/DnaJ peptide-binding domain
  • 49493 - HSP40/DnaJ peptide-binding domain
  • 0Direct
    49503,49503
  • 49503 - Cupredoxins
  • 49503 - Cupredoxins
  • 0Direct
    81995,82919
  • 81995 - beta-sandwich domain of Sec23/24
  • 82919 - Zn-finger domain of Sec23/24
  • 0Direct
    51905,55424
  • 51905 - FAD/NAD(P)-binding domain
  • 55424 - FAD/NAD-linked reductases, dimerisation (C-terminal) domain
  • 0Direct
    54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0Direct
    50615,52540
  • 50615 - N-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    52283,51735
  • 52283 - Formate/glycerate dehydrogenase catalytic domain-like
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0Direct
    54747,46906
  • 54747 - Ribosomal L11/L12e N-terminal domain
  • 46906 - Ribosomal protein L11, C-terminal domain
  • 0Direct
    56053,56053
  • 56053 - Ribosomal protein L6
  • 56053 - Ribosomal protein L6
  • 0Direct
    52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    46565,57938
  • 46565 - Chaperone J-domain
  • 57938 - DnaJ/Hsp40 cysteine-rich domain
  • 0Direct
    49879,56112
  • 49879 - SMAD/FHA domain
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    103657,50729
  • 103657 - BAR/IMD domain-like
  • 50729 - PH domain-like
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0Direct
    52540,140990
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 140990 - FtsH protease domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    51905,56425
  • 51905 - FAD/NAD(P)-binding domain
  • 56425 - Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
  • 0Direct
    56235,52402
  • 56235 - N-terminal nucleophile aminohydrolases (Ntn hydrolases)
  • 52402 - Adenine nucleotide alpha hydrolases-like
  • 0Direct
    53150,48334
  • 53150 - DNA repair protein MutS, domain II
  • 48334 - DNA repair protein MutS, domain III
  • 0Direct
    88723,47807
  • 88723 - PIN domain-like
  • 47807 - 5' to 3' exonuclease, C-terminal subdomain
  • 0Direct
    57938,49493
  • 57938 - DnaJ/Hsp40 cysteine-rich domain
  • 49493 - HSP40/DnaJ peptide-binding domain
  • 0Direct
    54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0Direct
    57701,57959
  • 57701 - Zn2/Cys6 DNA-binding domain
  • 57959 - Leucine zipper domain
  • 0Direct
    56024,56024
  • 56024 - Phospholipase D/nuclease
  • 56024 - Phospholipase D/nuclease
  • 0Direct
    46689,46689
  • 46689 - Homeodomain-like
  • 46689 - Homeodomain-like
  • 0Direct
    56176,55103
  • 56176 - FAD-binding/transporter-associated domain-like
  • 55103 - FAD-linked oxidases, C-terminal domain
  • 0Direct
    81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0Direct
    50249,50104
  • 50249 - Nucleic acid-binding proteins
  • 50104 - Translation proteins SH3-like domain
  • 0Direct
    51735,55347
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 55347 - Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
  • 0.03076Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.1911Inherited
    52440,56059
  • 52440 - PreATP-grasp domain
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 0.2515Inherited
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.4985Inherited
    52540,-9
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • -9 - PDB
  • 0.7486Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    81995,82919,53300
  • 81995 - beta-sandwich domain of Sec23/24
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    53150,48334,52540
  • 53150 - DNA repair protein MutS, domain II
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57938,49493,49493
  • 57938 - DnaJ/Hsp40 cysteine-rich domain
  • 49493 - HSP40/DnaJ peptide-binding domain
  • 49493 - HSP40/DnaJ peptide-binding domain
  • 0Direct
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0Direct
    50615,52540,47917
  • 50615 - N-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    46565,57938,49493
  • 46565 - Chaperone J-domain
  • 57938 - DnaJ/Hsp40 cysteine-rich domain
  • 49493 - HSP40/DnaJ peptide-binding domain
  • 0Direct
    49503,49503,49503
  • 49503 - Cupredoxins
  • 49503 - Cupredoxins
  • 49503 - Cupredoxins
  • 0Direct


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