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Yeast Phenotype (YP): nutrient utilization

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Root: YP Hierarchy (yeast phenotype from Ascomycete phenotype ontology)

Shortest distance to current term (+ for parents, - for children) YP term [YP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   observable [APO:0000017] <7>
+ 1:   metabolism and growth [APO:0000094] <13>(76|72) (77|35|7)
0:   nutrient utilization [APO:0000096] <9>(21|18) (21|8|1)
- 1:   utilization of carbon source [APO:0000098] <2>(13|13) (13|6|1)
- 1:   auxotrophy [APO:0000097](0|0) (0|0|0)
- 1:   nutrient uptake [APO:0000100](1|0) (1|0|0)
- 1:   utilization of iron source [APO:0000157](1|1) (1|1|0)
- 1:   utilization of magnesium source [APO:0000294](0|0) (0|0|0)
- 1:   utilization of nitrogen source [APO:0000099](7|5) (7|2|0)
- 1:   utilization of phosphorus source [APO:0000125](0|0) (0|0|0)
- 1:   utilization of sulfur source [APO:0000219](0|0) (0|0|0)
- 1:   utilization of zinc source [APO:0000293](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein L60Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
F1F0 ATP synthase subunit C0Direct
Ribosomal protein L130Direct
Ribosomal L11/L12e N-terminal domain0Direct
S13-like H2TH domain0Direct
Endosomal sorting complex assembly domain0Direct
Ribosomal protein L140Direct
Ribosomal protein L11, C-terminal domain0Direct
TK C-terminal domain-like0.002472Inherited
Class II aaRS and biotin synthetases0.01628Inherited
SAICAR synthase-like0.01639Inherited
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.02746Inherited
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain0.06467Inherited
Nucleotidylyl transferase0.197Inherited
PreATP-grasp domain0.2031Inherited
EF-G C-terminal domain-like0.2225Inherited
Glutathione synthetase ATP-binding domain-like0.2944Inherited
NAD(P)-binding Rossmann-fold domains0.3952Inherited
MFS general substrate transporter1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Ribosomal protein L130Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Vacuolar sorting protein domain0Direct
Ribosomal protein S130Direct
Ribosomal protein L60Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein L140Direct
F1F0 ATP synthase subunit C0Direct
Ribosomal protein L11, C-terminal domain0Direct
Ribosomal L11/L12e N-terminal domain0Direct
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.02568Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.0481Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0498Inherited
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain0.06027Inherited
BC N-terminal domain-like0.1135Inherited
BC ATP-binding domain-like0.1135Inherited
EF-G/eEF-2 domains III and V0.2056Inherited
Class I glutamine amidotransferases (GAT)0.3761Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Ribosomal L11/L12e N-terminal domain0Direct
Ribosomal protein L130Direct
F1F0 ATP synthase subunit C0Direct
Endosomal sorting complex assembly domain0Direct
Ribosomal protein L140Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
S13-like H2TH domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein L60Direct
Ribosomal protein L11, C-terminal domain0Direct
TK C-terminal domain-like0.002067Inherited
Class II aaRS and biotin synthetases0.014Inherited
SAICAR synthase-like0.0141Inherited
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.02388Inherited
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain0.05775Inherited
Nucleotidylyl transferase0.1832Inherited
PreATP-grasp domain0.1893Inherited
EF-G C-terminal domain-like0.2079Inherited
Glutathione synthetase ATP-binding domain-like0.2787Inherited
NAD(P)-binding Rossmann-fold domains0.3777Inherited
MFS general substrate transporter1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50615,52540
  • 50615 - N-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54747,46906
  • 54747 - Ribosomal L11/L12e N-terminal domain
  • 46906 - Ribosomal protein L11, C-terminal domain
  • 0Direct
    56053,56053
  • 56053 - Ribosomal protein L6
  • 56053 - Ribosomal protein L6
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.009206Inherited
    51735,55347
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 55347 - Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
  • 0.05775Inherited
    52440,56059
  • 52440 - PreATP-grasp domain
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 0.1119Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50615,52540,47917
  • 50615 - N-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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