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Yeast Phenotype (YP): utilization of carbon source

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Root: YP Hierarchy (yeast phenotype from Ascomycete phenotype ontology)

Shortest distance to current term (+ for parents, - for children) YP term [YP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   observable [APO:0000017] <7>
+ + 2:   metabolism and growth [APO:0000094] <13>(76|72) (77|35|7)
+ 1:   nutrient utilization [APO:0000096] <9>(21|18) (21|8|1)
0:   utilization of carbon source [APO:0000098] <2>(13|13) (13|6|1)
- 1:   respiratory metabolism [APO:0000102] <5>(7|7) (7|4|1)
- 1:   fermentative metabolism [APO:0000101] <1>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein L60Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
F1F0 ATP synthase subunit C0Direct
Ribosomal protein L130Direct
Ribosomal L11/L12e N-terminal domain0Direct
S13-like H2TH domain0Direct
Endosomal sorting complex assembly domain0Direct
Ribosomal protein L140Direct
Ribosomal protein L11, C-terminal domain0Direct
Class II aaRS and biotin synthetases0.005689Inherited
EF-G C-terminal domain-like0.08579Inherited
Nucleotidylyl transferase0.504Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Ribosomal protein L130Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Vacuolar sorting protein domain0Direct
Ribosomal protein S130Direct
Ribosomal protein L60Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein L140Direct
F1F0 ATP synthase subunit C0Direct
Ribosomal protein L11, C-terminal domain0Direct
Ribosomal L11/L12e N-terminal domain0Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.02162Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.02213Inherited
EF-G/eEF-2 domains III and V0.07732Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Ribosomal L11/L12e N-terminal domain0Direct
Ribosomal protein L130Direct
F1F0 ATP synthase subunit C0Direct
Endosomal sorting complex assembly domain0Direct
Ribosomal protein L140Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
S13-like H2TH domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein L60Direct
Ribosomal protein L11, C-terminal domain0Direct
Class II aaRS and biotin synthetases0.004804Inherited
EF-G C-terminal domain-like0.07735Inherited
Nucleotidylyl transferase0.4874Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50615,52540
  • 50615 - N-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54747,46906
  • 54747 - Ribosomal L11/L12e N-terminal domain
  • 46906 - Ribosomal protein L11, C-terminal domain
  • 0Direct
    56053,56053
  • 56053 - Ribosomal protein L6
  • 56053 - Ribosomal protein L6
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.004988Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50615,52540,47917
  • 50615 - N-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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