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Yeast Phenotype (YP): chromosome/plasmid maintenance

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Root: YP Hierarchy (yeast phenotype from Ascomycete phenotype ontology)

Shortest distance to current term (+ for parents, - for children) YP term [YP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   observable [APO:0000017] <7>
+ 1:   cellular processes [APO:0000066] <6>(218|225) (221|88|20)
0:   chromosome/plasmid maintenance [APO:0000143] <8>(12|10) (12|3|0)
- 1:   aneuploidy [APO:0000336](0|0) (0|0|0)
- 1:   chromosome segregation [APO:0000208](0|0) (1|0|0)
- 1:   mitotic recombination [APO:0000225](0|0) (0|0|0)
- 1:   mutation frequency [APO:0000198](3|3) (3|2|0)
- 1:   polyploidy [APO:0000337](0|0) (0|0|0)
- 1:   silencing [APO:0000046](0|0) (0|0|0)
- 1:   telomere length [APO:0000144](0|1) (0|0|0)
- 1:   transposable element transposition [APO:0000047](0|2) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DNA ligase/mRNA capping enzyme, catalytic domain0Direct
SAICAR synthase-like0Direct
PriA/YqbF domain0Direct
GINS helical bundle-like0Direct
Nucleic acid-binding proteins0.000005488Direct
Bromodomain0.0002343Direct
Prefoldin0.000424Direct
GroEL apical domain-like0.0004977Direct
P-loop containing nucleoside triphosphate hydrolases0.0006243Direct
"Winged helix" DNA-binding domain0.0009782Direct
post-AAA+ oligomerization domain-like0.02142Inherited
DNA/RNA polymerases0.04325Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
DNA ligase/mRNA capping enzyme postcatalytic domain0Direct
Vacuolar sorting protein domain0Direct
CheY-related0Direct
SWIRM domain0Direct
DNA polymerase I0Direct
Bromodomain0.0001938Direct
Group II chaperonin (CCT, TRIC), apical domain0.0006238Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain0.03685Inherited
DNA polymerase III clamp loader subunits, C-terminal domain0.04678Inherited
DnaQ-like 3'-5' exonuclease0.06273Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PriA/YqbF domain0Direct
GINS helical bundle-like0Direct
SAICAR synthase-like0Direct
DNA ligase/mRNA capping enzyme, catalytic domain0Direct
Nucleic acid-binding proteins0.000004482Direct
Bromodomain0.0001925Direct
Prefoldin0.0003506Direct
GroEL apical domain-like0.0004117Direct
P-loop containing nucleoside triphosphate hydrolases0.0005167Direct
"Winged helix" DNA-binding domain0.0008111Direct
post-AAA+ oligomerization domain-like0.01856Inherited
DNA/RNA polymerases0.03809Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
56091,50249
  • 56091 - DNA ligase/mRNA capping enzyme, catalytic domain
  • 50249 - Nucleic acid-binding proteins
  • 0Direct
    53098,56672
  • 53098 - Ribonuclease H-like
  • 56672 - DNA/RNA polymerases
  • 0Direct
    52540,48019
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 48019 - post-AAA+ oligomerization domain-like
  • 0.01856Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)