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Yeast Phenotype (YP): culture appearance

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: YP Hierarchy (yeast phenotype from Ascomycete phenotype ontology)

Shortest distance to current term (+ for parents, - for children) YP term [YP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   observable [APO:0000017] <7>
+ 1:   morphology [APO:0000049] <2>(23|20) (25|7|2)
0:   culture appearance [APO:0000158] <3>(5|2) (5|0|0)
- 1:   colony appearance [APO:0000060] <4>(5|2) (5|0|0)
- 1:   liquid culture appearance [APO:0000064] <1>(0|0) (0|0|0)
- 1:   biofilm formation [APO:0000159](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
PriA/YqbF domain0Direct
GINS helical bundle-like0Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0003926Direct
Smc hinge domain0.0004151Direct
Class II aaRS ABD-related0.004271Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Smc hinge domain0.0002858Direct
Proteasome subunits0.0006133Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PriA/YqbF domain0Direct
GINS helical bundle-like0Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0003244Direct
Smc hinge domain0.0003431Direct
Class II aaRS ABD-related0.003596Inherited


Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)