SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Yeast Phenotype (YP): cell cycle progression

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: YP Hierarchy (yeast phenotype from Ascomycete phenotype ontology)

Shortest distance to current term (+ for parents, - for children) YP term [YP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   observable [APO:0000017] <7>
+ + 2:   cellular processes [APO:0000066] <6>(218|225) (221|88|20)
+ 1:   mitotic cell cycle [APO:0000072] <5>(10|10) (10|2|0)
0:   cell cycle progression [APO:0000253] <6>(10|10) (10|1|0)
- 1:   cell cycle progression in M phase [APO:0000258] <4>(0|0) (0|0|0)
- 1:   cell cycle progression in G1 phase [APO:0000255] <1>(0|0) (0|0|0)
- 1:   cell cycle progression in G2 phase [APO:0000254](2|2) (2|0|0)
- 1:   cell cycle progression in S phase [APO:0000266](2|0) (2|0|0)
- 1:   cell cycle progression through the G1/S phase transition [APO:0000269](0|0) (0|0|0)
- 1:   cell cycle progression through the G2/M phase transition [APO:0000257](1|2) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
post-AAA+ oligomerization domain-like0.0004409Direct
Cap-Gly domain0.000705Direct
Smc hinge domain0.000705Direct
GINS helical bundle-like0.000705Direct
Nucleic acid-binding proteins0.0007684Direct
"Winged helix" DNA-binding domain0.0007695Direct
Histone-fold0.002305Inherited
BRCT domain0.0105Inherited
Ankyrin repeat0.05809Inherited
Protein kinase-like (PK-like)0.9496Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DNA polymerase III clamp loader subunits, C-terminal domain0.00005947Direct
Nucleosome core histones0.00006802Direct
Cyclin0.0003556Direct
Forkhead DNA-binding domain0.0005015Direct
Single strand DNA-binding domain, SSB0.0005015Direct
Smc hinge domain0.0005015Direct
Cap-Gly domain0.0005015Direct
HMG-box0.0009667Direct
Ankyrin repeat0.1095Inherited
Protein kinases, catalytic subunit0.9501Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
post-AAA+ oligomerization domain-like0.0003646Direct
GINS helical bundle-like0.0005846Direct
Cap-Gly domain0.0005846Direct
Smc hinge domain0.0005846Direct
Nucleic acid-binding proteins0.0006374Direct
"Winged helix" DNA-binding domain0.0006385Direct
Histone-fold0.001924Inherited
BRCT domain0.008961Inherited
Ankyrin repeat0.05163Inherited
Protein kinase-like (PK-like)0.9434Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,48019
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 48019 - post-AAA+ oligomerization domain-like
  • 0.0003646Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)