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Zebrafish Anatomy (ZA): central nervous system

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + + 4:   anatomical structure [ZFA:0000037] <16>(269|288) (269|153|73)
+ + + 3:   whole organism [ZFA:0001094] <8>(266|287) (266|151|71)
+ + + 3:   anatomical group [ZFA:0001512] <5>(173|202) (177|125|60)
+ + 2:   anatomical system [ZFA:0001439] <18>(160|190) (165|119|58)
+ 1:   nervous system [ZFA:0000396] <9>(55|55) (58|31|16)
0:   central nervous system [ZFA:0000012] <10>(26|25) (28|14|9)
- 1:   white matter [ZFA:0001682] <23>(4|3) (4|3|3)
- 1:   brain [ZFA:0000008] <12>(17|16) (18|11|7)
- 1:   spinal cord [ZFA:0000075] <12>(4|3) (4|1|0)
- 1:   floor plate [ZFA:0000022] <9>(2|3) (3|0|0)
- 1:   brainstem [ZFA:0001707] <5>(2|2) (2|2|2)
- 1:   roof plate [ZFA:0007058] <5>(0|0) (0|0|0)
- 1:   ventricular system [ZFA:0001261] <5>(1|1) (2|0|0)
- 1:   neuromere [ZFA:0001328] <2>(0|0) (0|0|0)
- 1:   neuraxis flexure [ZFA:0005593] <1>(0|0) (0|0|0)
- 1:   grey matter [ZFA:0001681](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Soluble quinoprotein glucose dehydrogenase0Direct
BRK domain-like0Direct
HIT-like0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
PP2C-like0Direct
Composite domain of metallo-dependent hydrolases0Direct
Doublecortin (DC)0Direct
Cyclin-like0.019Inherited
SMAD/FHA domain0.04083Inherited
SMAD MH1 domain0.1032Inherited
Homeodomain-like0.2176Inherited
Subtilisin-like0.2519Inherited
Protease propeptides/inhibitors0.2519Inherited
lambda repressor-like DNA-binding domains0.2614Inherited
Cadherin-like0.3009Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.3229Inherited
Cytochrome P4500.3234Inherited
Riboflavin synthase domain-like0.334Inherited
Ferredoxin reductase-like, C-terminal NADP-linked domain0.334Inherited
Class II aaRS and biotin synthetases0.334Inherited
Fibronectin type III0.3407Inherited
beta-beta-alpha zinc fingers0.3762Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.4907Inherited
HLH, helix-loop-helix DNA-binding domain0.549Inherited
Immunoglobulin0.7035Inherited
PDZ domain-like0.7914Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Platelet-derived growth factor-like0Direct
BRK domain-like0Direct
Hydantoinase (dihydropyrimidinase)0Direct
Doublecortin (DC)0Direct
Hydantoinase (dihydropyrimidinase), catalytic domain0Direct
Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A0Direct
Zf-UBP0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
PP2C-like0Direct
Tetramerization domain of potassium channels0Direct
Tandem AAA-ATPase domain0.0248Inherited
POU-specific domain0.04392Inherited
SMAD MH1 domain0.09811Inherited
SMAD domain0.1324Inherited
I set domains0.1491Inherited
Homeodomain0.2909Inherited
Cytochrome P4500.304Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.3226Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.3253Inherited
Fibronectin type III0.3306Inherited
Cadherin0.3663Inherited
HLH, helix-loop-helix DNA-binding domain0.5409Inherited
Classic zinc finger, C2H20.5719Inherited
PDZ domain0.6105Inherited
Transforming growth factor (TGF)-beta0.7065Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Soluble quinoprotein glucose dehydrogenase0Direct
Composite domain of metallo-dependent hydrolases0Direct
PP2C-like0Direct
BRK domain-like0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
HIT-like0Direct
Doublecortin (DC)0Direct
Cyclin-like0.01334Inherited
SMAD/FHA domain0.02982Inherited
SMAD MH1 domain0.0826Inherited
Homeodomain-like0.1878Inherited
Subtilisin-like0.2207Inherited
Protease propeptides/inhibitors0.2207Inherited
lambda repressor-like DNA-binding domains0.2302Inherited
Cystine-knot cytokines0.2317Inherited
Cadherin-like0.2689Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.2899Inherited
Cytochrome P4500.2903Inherited
Ferredoxin reductase-like, C-terminal NADP-linked domain0.3012Inherited
Riboflavin synthase domain-like0.3012Inherited
Class II aaRS and biotin synthetases0.3012Inherited
Fibronectin type III0.3075Inherited
beta-beta-alpha zinc fingers0.3417Inherited
Ankyrin repeat0.4166Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.4583Inherited
HLH, helix-loop-helix DNA-binding domain0.5184Inherited
Immunoglobulin0.68Inherited
PDZ domain-like0.7762Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57903,47370
  • 57903 - FYVE/PHD zinc finger
  • 47370 - Bromodomain
  • 0Direct
    51556,51338
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0Direct
    103575,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 0Direct
    89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0545Inherited
    49562,48350
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48350 - GTPase activation domain, GAP
  • 0.05473Inherited
    54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0.2207Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.2513Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.2546Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.3709Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.4154Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.6168Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57196,49899,49899
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    103575,81296,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 81296 - E set domains
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57184,57184,57196
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.02109Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.06946Inherited
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.1461Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.1908Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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