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Zebrafish Anatomy (ZA): retina

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   anatomical system [ZFA:0001439] <18>(160|190) (165|119|58)
+ + + + + 5:   whole organism [ZFA:0001094] <8>(266|287) (266|151|71)
+ + + + + 5:   nervous system [ZFA:0000396] <9>(55|55) (58|31|16)
+ + + + 4:   sensory system [ZFA:0000282] <5>(22|23) (23|12|6)
+ + + + 4:   organism subdivision [ZFA:0001308] <10>(67|75) (70|51|30)
+ + + + 4:   compound organ [ZFA:0000496] <12>(97|109) (102|74|33)
+ + + 3:   head [ZFA:0001114] <15>(28|35) (31|19|16)
+ + + 3:   anatomical group [ZFA:0001512] <5>(173|202) (177|125|60)
+ + + 3:   cavitated compound organ [ZFA:0001490] <15>(79|90) (80|57|22)
+ + + 3:   visual system [ZFA:0001127] <2>(9|14) (10|9|5)
+ + + 3:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + 2:   eye [ZFA:0000107] <10>(9|14) (10|9|5)
+ + 2:   anatomical structure [ZFA:0000037] <16>(269|288) (269|153|73)
+ + 2:   anatomical cluster [ZFA:0001478] <54>(36|54) (40|28|21)
+ 1:   posterior segment eye [ZFA:0005567] <3>(5|6) (5|4|3)
+ 1:   multi-tissue structure [ZFA:0001488] <202>(67|77) (68|48|24)
0:   retina [ZFA:0000152] <4>(5|6) (5|4|3)
- 1:   retinal neural layer [ZFA:0000046] <9>(3|4) (3|2|1)
- 1:   ciliary marginal zone [ZFA:0001289](0|0) (0|0|0)
- 1:   retinal pigmented epithelium [ZFA:0000144](0|0) (0|0|0)
- 1:   visual pigment cell (sensu Vertebrata) [ZFA:0009171](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
ADC-like0Direct
Cdc48 domain 2-like0Direct
Multidrug efflux transporter AcrB transmembrane domain0.02449Inherited
WD40 repeat-like0.07926Inherited
NAD(P)-binding Rossmann-fold domains0.3375Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Cdc48 domain 2-like0Direct
Cdc48 N-terminal domain-like0Direct
Multidrug efflux transporter AcrB transmembrane domain0.004384Inherited
WD40-repeat0.1209Inherited
Tetratricopeptide repeat (TPR)0.1998Inherited
Motor proteins0.2438Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ADC-like0Direct
Cdc48 domain 2-like0Direct
Multidrug efflux transporter AcrB transmembrane domain0.01742Inherited
WD40 repeat-like0.06183Inherited
NAD(P)-binding Rossmann-fold domains0.3046Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.03119Inherited
    50156,50156
  • 50156 - PDZ domain-like
  • 50156 - PDZ domain-like
  • 0.0597Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.02387Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)