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Zebrafish Anatomy (ZA): brain

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + + 4:   anatomical group [ZFA:0001512] <5>(171|201) (175|125|60)
+ + + 3:   anatomical system [ZFA:0001439] <18>(158|189) (163|119|58)
+ + + 3:   anatomical structure [ZFA:0000037] <16>(268|286) (268|153|73)
+ + + 3:   whole organism [ZFA:0001094] <8>(265|285) (265|151|71)
+ + 2:   nervous system [ZFA:0000396] <9>(53|54) (56|32|16)
+ + 2:   compound organ [ZFA:0000496] <12>(97|108) (101|75|33)
+ 1:   cavitated compound organ [ZFA:0001490] <15>(77|89) (79|58|22)
+ 1:   central nervous system [ZFA:0000012] <10>(26|25) (28|15|9)
0:   brain [ZFA:0000008] <12>(17|16) (18|12|7)
- 1:   midbrain [ZFA:0000128] <17>(5|1) (5|2|1)
- 1:   hindbrain [ZFA:0000029] <14>(0|0) (0|1|1)
- 1:   brain nucleus [ZFA:0005575] <10>(0|0) (0|1|1)
- 1:   brain vasculature [ZFA:0000099] <8>(1|1) (1|0|0)
- 1:   choroid plexus [ZFA:0001443] <6>(0|0) (0|0|0)
- 1:   forebrain [ZFA:0000109] <6>(8|8) (9|5|3)
- 1:   granule cell [ZFA:0009070] <2>(0|0) (0|0|0)
- 1:   midbrain hindbrain boundary [ZFA:0000042] <1>(0|0) (0|1|1)
- 1:   cephalic flexure [ZFA:0001640](0|0) (0|0|0)
- 1:   choroidal fissure [ZFA:0001075](0|0) (0|0|0)
- 1:   forebrain midbrain boundary [ZFA:0001367](0|0) (0|0|0)
- 1:   supraoptic tract [ZFA:0001657](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Doublecortin (DC)0Direct
PP2C-like0Direct
BRK domain-like0Direct
HIT-like0Direct
Homeodomain-like0.003434Inherited
lambda repressor-like DNA-binding domains0.1068Inherited
Class II aaRS and biotin synthetases0.113Inherited
Riboflavin synthase domain-like0.113Inherited
Ferredoxin reductase-like, C-terminal NADP-linked domain0.113Inherited
Protease propeptides/inhibitors0.1135Inherited
Subtilisin-like0.1135Inherited
Cyclin-like0.1248Inherited
Cadherin-like0.1366Inherited
Cytochrome P4500.2094Inherited
beta-beta-alpha zinc fingers0.3381Inherited
Fibronectin type III0.4278Inherited
Immunoglobulin0.9351Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Platelet-derived growth factor-like0Direct
BRK domain-like0Direct
Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A0Direct
Doublecortin (DC)0Direct
Tetramerization domain of potassium channels0Direct
PP2C-like0Direct
Tandem AAA-ATPase domain0.0003926Direct
POU-specific domain0.005492Inherited
Homeodomain0.005568Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.09999Inherited
Cadherin0.1861Inherited
Cytochrome P4500.1964Inherited
Fibronectin type III0.4357Inherited
Classic zinc finger, C2H20.4801Inherited
I set domains0.4936Inherited
Transforming growth factor (TGF)-beta0.5042Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Doublecortin (DC)0Direct
HIT-like0Direct
BRK domain-like0Direct
PP2C-like0Direct
Homeodomain-like0.002211Inherited
lambda repressor-like DNA-binding domains0.08551Inherited
Cystine-knot cytokines0.08606Inherited
Ferredoxin reductase-like, C-terminal NADP-linked domain0.09111Inherited
Class II aaRS and biotin synthetases0.09111Inherited
Riboflavin synthase domain-like0.09111Inherited
Subtilisin-like0.09167Inherited
Protease propeptides/inhibitors0.09167Inherited
Cyclin-like0.1019Inherited
Cadherin-like0.1125Inherited
Cytochrome P4500.1795Inherited
beta-beta-alpha zinc fingers0.3049Inherited
Fibronectin type III0.3932Inherited
Immunoglobulin0.9305Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57903,47370
  • 57903 - FYVE/PHD zinc finger
  • 47370 - Bromodomain
  • 0Direct
    49562,48350
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48350 - GTPase activation domain, GAP
  • 0.0334Inherited
    54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0.04388Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.09167Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.1296Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.208Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.3677Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.4191Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.6817Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57196,49899,49899
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.08791Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.09242Inherited
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.2244Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.3697Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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