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Zebrafish Anatomy (ZA): central nervous system

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + + 4:   anatomical structure [ZFA:0000037] <16>(268|286) (268|153|73)
+ + + 3:   whole organism [ZFA:0001094] <8>(265|285) (265|151|71)
+ + + 3:   anatomical group [ZFA:0001512] <5>(171|201) (175|125|60)
+ + 2:   anatomical system [ZFA:0001439] <18>(158|189) (163|119|58)
+ 1:   nervous system [ZFA:0000396] <9>(53|54) (56|32|16)
0:   central nervous system [ZFA:0000012] <10>(26|25) (28|15|9)
- 1:   white matter [ZFA:0001682] <23>(4|3) (4|3|3)
- 1:   brain [ZFA:0000008] <12>(17|16) (18|12|7)
- 1:   spinal cord [ZFA:0000075] <12>(4|3) (4|1|0)
- 1:   floor plate [ZFA:0000022] <9>(2|3) (3|0|0)
- 1:   brainstem [ZFA:0001707] <5>(2|2) (2|2|2)
- 1:   roof plate [ZFA:0007058] <5>(0|0) (0|0|0)
- 1:   ventricular system [ZFA:0001261] <5>(1|2) (2|0|0)
- 1:   neuromere [ZFA:0001328] <2>(0|0) (0|0|0)
- 1:   neuraxis flexure [ZFA:0005593] <1>(0|0) (0|0|0)
- 1:   grey matter [ZFA:0001681](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Doublecortin (DC)0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Composite domain of metallo-dependent hydrolases0Direct
PP2C-like0Direct
BRK domain-like0Direct
Soluble quinoprotein glucose dehydrogenase0Direct
HIT-like0Direct
Cyclin-like0.01901Inherited
SMAD/FHA domain0.04052Inherited
SMAD MH1 domain0.1024Inherited
lambda repressor-like DNA-binding domains0.1872Inherited
Homeodomain-like0.2147Inherited
Protease propeptides/inhibitors0.2513Inherited
Subtilisin-like0.2513Inherited
Cadherin-like0.2994Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.3214Inherited
Cytochrome P4500.3236Inherited
Class II aaRS and biotin synthetases0.3335Inherited
Riboflavin synthase domain-like0.3335Inherited
Ferredoxin reductase-like, C-terminal NADP-linked domain0.3335Inherited
Fibronectin type III0.3403Inherited
beta-beta-alpha zinc fingers0.3414Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.4905Inherited
HLH, helix-loop-helix DNA-binding domain0.5503Inherited
Immunoglobulin0.7036Inherited
PDZ domain-like0.7889Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Platelet-derived growth factor-like0Direct
BRK domain-like0Direct
Hydantoinase (dihydropyrimidinase), catalytic domain0Direct
Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A0Direct
Doublecortin (DC)0Direct
Hydantoinase (dihydropyrimidinase)0Direct
Tetramerization domain of potassium channels0Direct
PP2C-like0Direct
POU-specific domain0.01208Inherited
Tandem AAA-ATPase domain0.02411Inherited
SMAD MH1 domain0.09671Inherited
SMAD domain0.131Inherited
I set domains0.1481Inherited
Homeodomain0.2821Inherited
Cytochrome P4500.3022Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.3189Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.3224Inherited
Fibronectin type III0.3285Inherited
Cadherin0.3616Inherited
Ankyrin repeat0.3805Inherited
HLH, helix-loop-helix DNA-binding domain0.539Inherited
Classic zinc finger, C2H20.57Inherited
PDZ domain0.6066Inherited
Transforming growth factor (TGF)-beta0.7061Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Composite domain of metallo-dependent hydrolases0Direct
Doublecortin (DC)0Direct
Soluble quinoprotein glucose dehydrogenase0Direct
HIT-like0Direct
BRK domain-like0Direct
PP2C-like0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Cyclin-like0.01336Inherited
SMAD/FHA domain0.02958Inherited
SMAD MH1 domain0.08183Inherited
lambda repressor-like DNA-binding domains0.1587Inherited
Homeodomain-like0.1846Inherited
Subtilisin-like0.2195Inherited
Protease propeptides/inhibitors0.2195Inherited
Cystine-knot cytokines0.2319Inherited
Cadherin-like0.2672Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.2884Inherited
Cytochrome P4500.2904Inherited
Ferredoxin reductase-like, C-terminal NADP-linked domain0.3004Inherited
Class II aaRS and biotin synthetases0.3004Inherited
Riboflavin synthase domain-like0.3004Inherited
Fibronectin type III0.3069Inherited
beta-beta-alpha zinc fingers0.308Inherited
Ankyrin repeat0.3652Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.4582Inherited
HLH, helix-loop-helix DNA-binding domain0.5192Inherited
Immunoglobulin0.6801Inherited
PDZ domain-like0.7737Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    103575,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57903,47370
  • 57903 - FYVE/PHD zinc finger
  • 47370 - Bromodomain
  • 0Direct
    51556,51338
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.05466Inherited
    49562,48350
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48350 - GTPase activation domain, GAP
  • 0.05485Inherited
    54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0.2195Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.2195Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.2515Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.2547Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.3706Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.3805Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.6186Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57184,57184,57196
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    103575,81296,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 81296 - E set domains
  • 0Direct
    57196,49899,49899
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.02079Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.06965Inherited
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.1462Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.1909Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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