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Zebrafish Anatomy (ZA): diencephalon

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   anatomical group [ZFA:0001512] <5>(171|201) (175|125|60)
+ + + + + 5:   whole organism [ZFA:0001094] <8>(265|285) (265|151|71)
+ + + + + 5:   anatomical system [ZFA:0001439] <18>(158|189) (163|119|58)
+ + + + 4:   compound organ [ZFA:0000496] <12>(97|108) (101|75|33)
+ + + + 4:   nervous system [ZFA:0000396] <9>(53|54) (56|32|16)
+ + + 3:   cavitated compound organ [ZFA:0001490] <15>(77|89) (79|58|22)
+ + + 3:   central nervous system [ZFA:0000012] <10>(26|25) (28|15|9)
+ + + 3:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + 2:   brain [ZFA:0000008] <12>(17|16) (18|12|7)
+ + 2:   anatomical structure [ZFA:0000037] <16>(268|286) (268|153|73)
+ 1:   forebrain [ZFA:0000109] <6>(8|8) (9|5|3)
+ 1:   multi-tissue structure [ZFA:0001488] <202>(67|76) (67|50|24)
0:   diencephalon [ZFA:0000101] <17>(7|8) (8|5|3)
- 1:   diencephalic nucleus [ZFA:0001659] <37>(0|0) (0|0|0)
- 1:   diencephalic white matter [ZFA:0000338] <17>(2|1) (2|1|1)
- 1:   caudal tuberculum [ZFA:0000633] <10>(0|0) (0|0|0)
- 1:   synencephalon [ZFA:0000293] <5>(1|2) (1|2|2)
- 1:   hypothalamus [ZFA:0000032] <4>(0|0) (0|0|0)
- 1:   preoptic area [ZFA:0000470] <4>(1|1) (1|0|0)
- 1:   third ventricle [ZFA:0000161] <4>(0|0) (0|0|0)
- 1:   epithalamus [ZFA:0000509] <3>(0|1) (1|0|0)
- 1:   hypophysis [ZFA:0000118] <3>(1|1) (1|0|0)
- 1:   pretectum [ZFA:0000418] <3>(0|0) (0|0|0)
- 1:   thalamus [ZFA:0001215] <3>(1|1) (1|1|0)
- 1:   diencephalic efferent neurons to the lateral line [ZFA:0005806](0|0) (0|0|0)
- 1:   floor plate diencephalic region [ZFA:0000871](0|0) (0|0|0)
- 1:   lateral wall diencephalic region [ZFA:0000780](0|0) (0|0|0)
- 1:   optic stalk [ZFA:0000137](0|0) (0|0|0)
- 1:   roof plate diencephalic region [ZFA:0001358](0|0) (0|0|0)
- 1:   ventro-rostral cluster [ZFA:0007002](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.0001115Direct
lambda repressor-like DNA-binding domains0.0002032Direct
Cadherin-like0.01641Inherited
Cytochrome P4500.03245Inherited
Cyclin-like0.04573Inherited
Fibronectin type III0.1118Inherited
beta-beta-alpha zinc fingers0.3793Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
POU-specific domain0.000002045Direct
Homeodomain0.00007854Direct
Cadherin0.01001Inherited
Cytochrome P4500.0259Inherited
Transforming growth factor (TGF)-beta0.03689Inherited
Fibronectin type III0.09852Inherited
I set domains0.1187Inherited
Classic zinc finger, C2H20.142Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.00006498Direct
lambda repressor-like DNA-binding domains0.0001197Direct
Cadherin-like0.01144Inherited
Cystine-knot cytokines0.02146Inherited
Cytochrome P4500.02349Inherited
Cyclin-like0.03356Inherited
Fibronectin type III0.09Inherited
beta-beta-alpha zinc fingers0.3448Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.0007774Direct
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.006589Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0146Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.2072Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.2476Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.003041Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.004733Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0992Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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