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Zebrafish Anatomy (ZA): forebrain

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Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   anatomical group [ZFA:0001512] <5>(178|208) (181|127|60)
+ + + + 4:   anatomical system [ZFA:0001439] <18>(164|193) (168|119|58)
+ + + + 4:   whole organism [ZFA:0001094] <8>(272|295) (272|155|71)
+ + + 3:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + 3:   nervous system [ZFA:0000396] <9>(56|58) (60|32|17)
+ + + 3:   compound organ [ZFA:0000496] <12>(96|110) (100|69|30)
+ + 2:   cavitated compound organ [ZFA:0001490] <15>(78|91) (80|55|22)
+ + 2:   anatomical structure [ZFA:0000037] <16>(275|296) (275|157|73)
+ + 2:   central nervous system [ZFA:0000012] <10>(27|27) (30|13|9)
+ 1:   multi-tissue structure [ZFA:0001488] <202>(69|77) (72|47|23)
+ 1:   brain [ZFA:0000008] <12>(19|19) (20|10|7)
0:   forebrain [ZFA:0000109] <6>(9|10) (10|4|3)
- 1:   diencephalon [ZFA:0000101] <17>(8|10) (10|4|3)
- 1:   telencephalon [ZFA:0000079] <10>(2|2) (3|0|0)
- 1:   lateral forebrain bundle [ZFA:0007012] <2>(0|0) (0|0|0)
- 1:   forebrain ventricle [ZFA:0001259](0|0) (0|0|0)
- 1:   telencephalon diencephalon boundary [ZFA:0001343](0|0) (0|0|0)
- 1:   thalamic eminence [ZFA:0007010](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.0005307Direct
lambda repressor-like DNA-binding domains0.003587Inherited
Nuclear receptor ligand-binding domain0.02019Inherited
Cadherin-like0.02228Inherited
Fibronectin type III0.05768Inherited
Cytochrome P4500.115Inherited
Cyclin-like0.1391Inherited
beta-beta-alpha zinc fingers0.2833Inherited
Immunoglobulin0.4866Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.0001304Direct
POU-specific domain0.0001597Direct
Nuclear receptor0.01203Inherited
Cadherin0.01347Inherited
Nuclear receptor ligand-binding domain0.01649Inherited
Fibronectin type III0.05096Inherited
Cytochrome P4500.1012Inherited
Classic zinc finger, C2H20.1096Inherited
Transforming growth factor (TGF)-beta0.1498Inherited
I set domains0.2382Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.0003194Direct
lambda repressor-like DNA-binding domains0.002323Inherited
Nuclear receptor ligand-binding domain0.01423Inherited
Cadherin-like0.01585Inherited
Fibronectin type III0.04365Inherited
Cystine-knot cytokines0.04938Inherited
Cytochrome P4500.09291Inherited
Cyclin-like0.1149Inherited
beta-beta-alpha zinc fingers0.2509Inherited
Immunoglobulin0.4539Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.008475Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.02846Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.1518Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.4039Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.005866Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.02467Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.2271Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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