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Zebrafish Anatomy (ZA): forebrain

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   anatomical group [ZFA:0001512] <5>(171|201) (175|125|60)
+ + + + 4:   whole organism [ZFA:0001094] <8>(265|285) (265|151|71)
+ + + + 4:   anatomical system [ZFA:0001439] <18>(158|189) (163|119|58)
+ + + 3:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + 3:   nervous system [ZFA:0000396] <9>(53|54) (56|32|16)
+ + + 3:   compound organ [ZFA:0000496] <12>(97|108) (101|75|33)
+ + 2:   anatomical structure [ZFA:0000037] <16>(268|286) (268|153|73)
+ + 2:   cavitated compound organ [ZFA:0001490] <15>(77|89) (79|58|22)
+ + 2:   central nervous system [ZFA:0000012] <10>(26|25) (28|15|9)
+ 1:   brain [ZFA:0000008] <12>(17|16) (18|12|7)
+ 1:   multi-tissue structure [ZFA:0001488] <202>(67|76) (67|50|24)
0:   forebrain [ZFA:0000109] <6>(8|8) (9|5|3)
- 1:   diencephalon [ZFA:0000101] <17>(7|8) (8|5|3)
- 1:   telencephalon [ZFA:0000079] <10>(2|2) (3|0|0)
- 1:   lateral forebrain bundle [ZFA:0007012] <2>(0|0) (0|0|0)
- 1:   forebrain ventricle [ZFA:0001259](0|0) (0|0|0)
- 1:   telencephalon diencephalon boundary [ZFA:0001343](0|0) (0|0|0)
- 1:   thalamic eminence [ZFA:0007010](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.000322Direct
lambda repressor-like DNA-binding domains0.001309Inherited
Cadherin-like0.022Inherited
Fibronectin type III0.04059Inherited
Cytochrome P4500.08633Inherited
Cyclin-like0.1372Inherited
beta-beta-alpha zinc fingers0.2656Inherited
Immunoglobulin0.4596Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
POU-specific domain0.00001839Direct
Homeodomain0.00006566Direct
Cadherin0.01302Inherited
Fibronectin type III0.03385Inherited
Cytochrome P4500.07355Inherited
Classic zinc finger, C2H20.1061Inherited
Transforming growth factor (TGF)-beta0.1281Inherited
I set domains0.2055Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.0001916Direct
lambda repressor-like DNA-binding domains0.0008074Direct
Cadherin-like0.01559Inherited
Fibronectin type III0.02965Inherited
Cystine-knot cytokines0.03834Inherited
Cytochrome P4500.06771Inherited
Cyclin-like0.113Inherited
beta-beta-alpha zinc fingers0.2342Inherited
Immunoglobulin0.4256Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.003259Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.008287Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.02784Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.1399Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.3724Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.005719Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.02407Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.2007Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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