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Zebrafish Anatomy (ZA): nervous system

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + 3:   anatomical structure [ZFA:0000037] <16>(268|285) (268|153|72)
+ + 2:   anatomical group [ZFA:0001512] <5>(170|199) (174|124|60)
+ + 2:   whole organism [ZFA:0001094] <8>(265|284) (265|151|70)
+ 1:   anatomical system [ZFA:0001439] <18>(157|187) (162|118|58)
0:   nervous system [ZFA:0000396] <9>(52|53) (55|32|16)
- 1:   neuron [ZFA:0009248] <26>(6|7) (6|4|1)
- 1:   central nervous system [ZFA:0000012] <10>(25|24) (27|15|9)
- 1:   nerve [ZFA:0007009] <7>(2|1) (2|1|1)
- 1:   peripheral nervous system [ZFA:0000142] <7>(3|2) (3|2|1)
- 1:   sensory system [ZFA:0000282] <5>(20|21) (21|12|6)
- 1:   autonomic nervous system [ZFA:0001574] <4>(0|0) (0|0|0)
- 1:   ependymal cell [ZFA:0009033] <1>(0|0) (0|0|0)
- 1:   glial cell [ZFA:0009073] <1>(0|0) (0|0|0)
- 1:   primitive meninx [ZFA:0001355] <1>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
ADC-like0Direct
BRK domain-like0Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0Direct
Tubulin C-terminal domain-like0Direct
Tubulin nucleotide-binding domain-like0Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0Direct
Riboflavin synthase domain-like0Direct
PP2C-like0Direct
Single hybrid motif0Direct
Class II aaRS ABD-related0Direct
Composite domain of metallo-dependent hydrolases0Direct
Cdc48 domain 2-like0Direct
Class II aaRS and biotin synthetases0Direct
Metallo-dependent hydrolases0Direct
BPTI-like0Direct
Soluble quinoprotein glucose dehydrogenase0Direct
Formate/glycerate dehydrogenase catalytic domain-like0Direct
CCCH zinc finger0Direct
HSP20-like chaperones0Direct
SMAD MH1 domain0Direct
Glutathione synthetase ATP-binding domain-like0Direct
Nucleotide cyclase0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Doublecortin (DC)0Direct
Cap-Gly domain0Direct
HIT-like0Direct
Translational machinery components0Direct
JAB1/MPN domain0Direct
WD40 repeat-like0.003377Inherited
HMG-box0.05877Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.06737Inherited
Homeodomain-like0.1458Inherited
SMAD/FHA domain0.2231Inherited
Serine protease inhibitors0.2381Inherited
Protease propeptides/inhibitors0.2634Inherited
Cyclin-like0.3342Inherited
Sema domain0.3342Inherited
lambda repressor-like DNA-binding domains0.338Inherited
NAD(P)-binding Rossmann-fold domains0.3533Inherited
Subtilisin-like0.3785Inherited
Cadherin-like0.3941Inherited
Plexin repeat0.4882Inherited
GTPase activation domain, GAP0.4894Inherited
PDZ domain-like0.5137Inherited
Multidrug efflux transporter AcrB transmembrane domain0.5318Inherited
Fibronectin type III0.6792Inherited
beta-beta-alpha zinc fingers0.7462Inherited
Growth factor receptor domain0.7584Inherited
HLH, helix-loop-helix DNA-binding domain0.8599Inherited
EGF/Laminin0.9142Inherited
Immunoglobulin1Inherited
Glucocorticoid receptor-like (DNA-binding domain)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
CCCH zinc finger0Direct
SMAD MH1 domain0Direct
Formate/glycerate dehydrogenases, NAD-domain0Direct
SMAD domain0Direct
Platelet-derived growth factor-like0Direct
Hydantoinase (dihydropyrimidinase)0Direct
Anticodon-binding domain of Class II aaRS0Direct
C5 cytosine-specific DNA methylase, DCM0Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0Direct
Connexin430Direct
Cap-Gly domain0Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0Direct
BRK domain-like0Direct
Tubulin, C-terminal domain0Direct
Ovomucoid domain III-like0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain0Direct
Cdc48 domain 2-like0Direct
Hydantoinase (dihydropyrimidinase), catalytic domain0Direct
Chromo domain0Direct
Cdc48 N-terminal domain-like0Direct
PP2C-like0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
PWWP domain0Direct
Tubulin, GTPase domain0Direct
Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A0Direct
Small Kunitz-type inhibitors & BPTI-like toxins0Direct
Biotinyl/lipoyl-carrier proteins and domains0Direct
Adenylyl and guanylyl cyclase catalytic domain0Direct
Doublecortin (DC)0Direct
Tetramerization domain of potassium channels0Direct
WD40-repeat0.009848Inherited
Tetratricopeptide repeat (TPR)0.02674Inherited
Tandem AAA-ATPase domain0.02977Inherited
HMG-box0.04078Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.04912Inherited
Homeodomain0.1199Inherited
Multidrug efflux transporter AcrB transmembrane domain0.1322Inherited
POU-specific domain0.1403Inherited
Aquaporin-like0.2761Inherited
Sema domain0.2842Inherited
Growth factor receptor domain0.3236Inherited
Cadherin0.4069Inherited
Plexin repeat0.4346Inherited
PDZ domain0.4874Inherited
Ankyrin repeat0.515Inherited
Motor proteins0.5571Inherited
Fibronectin type III0.6101Inherited
Paired domain0.6848Inherited
I set domains0.7492Inherited
HLH, helix-loop-helix DNA-binding domain0.8114Inherited
EGF-type module0.8134Inherited
Classic zinc finger, C2H20.9238Inherited
Transforming growth factor (TGF)-beta0.9716Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
BPTI-like0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Doublecortin (DC)0Direct
HSP20-like chaperones0Direct
Riboflavin synthase domain-like0Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0Direct
Glutathione synthetase ATP-binding domain-like0Direct
BRK domain-like0Direct
ADC-like0Direct
Tubulin nucleotide-binding domain-like0Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0Direct
Soluble quinoprotein glucose dehydrogenase0Direct
Formate/glycerate dehydrogenase catalytic domain-like0Direct
PP2C-like0Direct
Cap-Gly domain0Direct
JAB1/MPN domain0Direct
HIT-like0Direct
Tubulin C-terminal domain-like0Direct
Single hybrid motif0Direct
Cdc48 domain 2-like0Direct
SMAD MH1 domain0Direct
Class II aaRS ABD-related0Direct
Class II aaRS and biotin synthetases0Direct
CCCH zinc finger0Direct
Composite domain of metallo-dependent hydrolases0Direct
Nucleotide cyclase0Direct
Metallo-dependent hydrolases0Direct
Translational machinery components0Direct
WD40 repeat-like0.002169Inherited
HMG-box0.04413Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.05133Inherited
Homeodomain-like0.1205Inherited
SMAD/FHA domain0.1928Inherited
Serine protease inhibitors0.2066Inherited
Protease propeptides/inhibitors0.2317Inherited
Aquaporin-like0.2839Inherited
Cyclin-like0.3011Inherited
Sema domain0.3011Inherited
lambda repressor-like DNA-binding domains0.305Inherited
NAD(P)-binding Rossmann-fold domains0.3193Inherited
Subtilisin-like0.3441Inherited
Cadherin-like0.3601Inherited
Plexin repeat0.4559Inherited
GTPase activation domain, GAP0.4575Inherited
PDZ domain-like0.482Inherited
Multidrug efflux transporter AcrB transmembrane domain0.5009Inherited
Ankyrin repeat0.5509Inherited
Fibronectin type III0.654Inherited
beta-beta-alpha zinc fingers0.726Inherited
Growth factor receptor domain0.7398Inherited
HLH, helix-loop-helix DNA-binding domain0.8475Inherited
Cystine-knot cytokines0.8585Inherited
EGF/Laminin0.9069Inherited
Glucocorticoid receptor-like (DNA-binding domain)1Inherited
Immunoglobulin1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57903,47370
  • 57903 - FYVE/PHD zinc finger
  • 47370 - Bromodomain
  • 0Direct
    63380,52343
  • 63380 - Riboflavin synthase domain-like
  • 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
  • 0Direct
    57362,57362
  • 57362 - BPTI-like
  • 57362 - BPTI-like
  • 0Direct
    54001,143791
  • 54001 - Cysteine proteinases
  • 143791 - DUSP-like
  • 0Direct
    52283,51735
  • 52283 - Formate/glycerate dehydrogenase catalytic domain-like
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0Direct
    51556,51338
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0Direct
    52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    50978,50998
  • 50978 - WD40 repeat-like
  • 50998 - Quinoprotein alcohol dehydrogenase-like
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    82199,57667
  • 82199 - SET domain
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0Direct
    103575,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 0Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0Direct
    48097,56112
  • 48097 - Regulator of G-protein signaling, RGS
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0.1463Inherited
    49562,48350
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48350 - GTPase activation domain, GAP
  • 0.2839Inherited
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.3011Inherited
    81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.3441Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.3441Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.4977Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.5164Inherited
    50156,50156
  • 50156 - PDZ domain-like
  • 50156 - PDZ domain-like
  • 0.6868Inherited
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.764Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.8106Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.8713Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.9363Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.9892Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.9988Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57196,49899,49899
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    82199,57667,57667
  • 82199 - SET domain
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    57184,57184,57196
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    103575,81296,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 81296 - E set domains
  • 0Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.2182Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.2424Inherited
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.3441Inherited
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.5466Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.5747Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.7258Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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