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Zebrafish Anatomy (ZA): organism subdivision

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   zebrafish anatomical entity [ZFA:0100000] <6>
+ 1:   whole organism [ZFA:0001094] <8>(265|284) (265|151|71)
+ 1:   anatomical structure [ZFA:0000037] <16>(268|285) (268|153|73)
0:   organism subdivision [ZFA:0001308] <10>(67|75) (72|51|31)
- 1:   surface structure [ZFA:0000292] <20>(7|6) (10|2|1)
- 1:   head [ZFA:0001114] <15>(29|35) (33|19|16)
- 1:   post-vent region [ZFA:0001117] <4>(8|9) (8|4|1)
- 1:   trunk [ZFA:0001115] <4>(9|9) (9|4|0)
- 1:   neuromere [ZFA:0001328] <2>(0|0) (0|0|0)
- 1:   axis [ZFA:0000092](0|0) (0|0|0)
- 1:   ball [ZFA:0000006](0|0) (0|0|0)
- 1:   caudal peduncle [ZFA:0000178](0|0) (0|0|0)
- 1:   extension [ZFA:0000106](1|0) (2|0|0)
- 1:   snout [ZFA:0005496](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DUSP-like0Direct
Glutathione synthetase ATP-binding domain-like0Direct
BPTI-like0Direct
Sec7 domain0Direct
CRAL/TRIO N-terminal domain0Direct
SNARE-like0Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
LCCL domain0Direct
Formate/glycerate dehydrogenase catalytic domain-like0Direct
ADC-like0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
BRK domain-like0Direct
Aromatic aminoacid monoxygenases, catalytic and oligomerization domains0Direct
HSP20-like chaperones0Direct
Cap-Gly domain0Direct
LDL receptor-like module0Direct
Cdc48 domain 2-like0Direct
CCCH zinc finger0Direct
HCP-like0Direct
Translational machinery components0Direct
Arginase/deacetylase0Direct
Kazal-type serine protease inhibitors0Direct
TATA-box binding protein-like0Direct
ACT-like0Direct
Tubulin nucleotide-binding domain-like0Direct
Composite domain of metallo-dependent hydrolases0Direct
Tubulin C-terminal domain-like0Direct
p53 tetramerization domain0Direct
Class I glutamine amidotransferase-like0Direct
Tricorn protease domain 20Direct
Connexin430Direct
Class II aaRS ABD-related0Direct
Polo-box domain0Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0Direct
SMAD MH1 domain0Direct
Class II aaRS and biotin synthetases0Direct
Moesin tail domain0Direct
Metallo-dependent hydrolases0Direct
Thyroglobulin type-1 domain0Direct
Nuclear receptor coactivator interlocking domain0Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
Retrovirus zinc finger-like domains0Direct
DNase I-like0Direct
Aquaporin-like0Direct
Notch domain0Direct
Translation proteins SH3-like domain0Direct
CalX-like0Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0Direct
ENTH/VHS domain0Direct
Smc hinge domain0Direct
Nucleotide cyclase0Direct
Translation proteins0Direct
SAICAR synthase-like0Direct
Single hybrid motif0Direct
Rhodanese/Cell cycle control phosphatase0Direct
Cysteine proteinases0.00005563Direct
Protein kinase-like (PK-like)0.052Inherited
Nucleotide-diphospho-sugar transferases0.08696Inherited
FnI-like domain0.1864Inherited
WD40 repeat-like0.187Inherited
Cystine-knot cytokines0.266Inherited
Alkaline phosphatase-like0.293Inherited
NAD(P)-binding Rossmann-fold domains0.3086Inherited
Cytokine0.3144Inherited
Multidrug efflux transporter AcrB transmembrane domain0.4612Inherited
L domain-like0.709Inherited
Concanavalin A-like lectins/glucanases0.8862Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
SMAD MH1 domain0Direct
Nuclear receptor coactivator interlocking domain0Direct
Plakophilin 1 helical region0Direct
Myotubularin-like phosphatases0Direct
Formate/glycerate dehydrogenases, NAD-domain0Direct
Ubiquitin-related0Direct
Platelet-derived growth factor-like0Direct
Smc hinge domain0Direct
Retrovirus zinc finger-like domains0Direct
Adenylyl and guanylyl cyclase catalytic domain0Direct
Cdc48 N-terminal domain-like0Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0Direct
Thyroglobulin type-1 domain0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
Aromatic aminoacid monoxygenases, catalytic and oligomerization domains0Direct
Connexin430Direct
Tubulin, C-terminal domain0Direct
BRK domain-like0Direct
Phenylalanine metabolism regulatory domain0Direct
CalX-beta domain0Direct
Cell cycle control phosphatase, catalytic domain0Direct
Nitrogenase iron protein-like0Direct
Extracellular domain of cell surface receptors0Direct
RUNT domain0Direct
Ovomucoid domain III-like0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
V set domains (antibody variable domain-like)0Direct
Biotinyl/lipoyl-carrier proteins and domains0Direct
CRAL/TRIO domain0Direct
p53 DNA-binding domain-like0Direct
Moesin tail domain0Direct
Cdc48 domain 2-like0Direct
Small Kunitz-type inhibitors & BPTI-like toxins0Direct
PWWP domain0Direct
Cap-Gly domain0Direct
Prohormone convertase 1 pro-domain0Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0Direct
CRAL/TRIO N-terminal domain0Direct
Elongation factors0Direct
Class I glutamine amidotransferases (GAT)0Direct
YWTD domain0Direct
LCCL domain0Direct
SMAD domain0Direct
p53 tetramerization domain0Direct
Tubulin, GTPase domain0Direct
Histone deacetylase, HDAC0Direct
Aquaporin-like0Direct
Proprotein convertase P-domain0Direct
Zf-UBP0Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Chromo domain0Direct
Hydantoinase (dihydropyrimidinase), catalytic domain0Direct
CCCH zinc finger0Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0Direct
Sec7 domain0Direct
Hydantoinase (dihydropyrimidinase)0Direct
Notch domain0Direct
LDL receptor-like module0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain0Direct
Clathrin coat assembly domain0Direct
Noncollagenous (NC1) domain of collagen IV0Direct
DUSP, domain in ubiquitin-specific proteases0Direct
Anticodon-binding domain of Class II aaRS0Direct
C5 cytosine-specific DNA methylase, DCM0Direct
HMG-box0.001159Inherited
Ubiquitin carboxyl-terminal hydrolase, UCH0.001573Inherited
T-box0.02451Inherited
Tetratricopeptide repeat (TPR)0.05328Inherited
Protein kinases, catalytic subunit0.06613Inherited
WD40-repeat0.2072Inherited
Short-chain cytokines0.2617Inherited
Multidrug efflux transporter AcrB transmembrane domain0.2617Inherited
Fibroblast growth factors (FGF)0.2816Inherited
VWC domain0.3474Inherited
Motor proteins0.7162Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
CRAL/TRIO N-terminal domain0Direct
Smc hinge domain0Direct
Class II aaRS ABD-related0Direct
Thyroglobulin type-1 domain0Direct
Single hybrid motif0Direct
Translation proteins SH3-like domain0Direct
ACT-like0Direct
SNARE-like0Direct
Translational machinery components0Direct
Nuclear receptor coactivator interlocking domain0Direct
Tricorn protease domain 20Direct
Aromatic aminoacid monoxygenases, catalytic and oligomerization domains0Direct
SAICAR synthase-like0Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Moesin tail domain0Direct
DUSP-like0Direct
TATA-box binding protein-like0Direct
DNase I-like0Direct
ADC-like0Direct
Retrovirus zinc finger-like domains0Direct
Polo-box domain0Direct
HCP-like0Direct
Composite domain of metallo-dependent hydrolases0Direct
CalX-like0Direct
BRK domain-like0Direct
SMAD MH1 domain0Direct
BPTI-like0Direct
Aquaporin-like0Direct
CCCH zinc finger0Direct
p53 tetramerization domain0Direct
Notch domain0Direct
HSP20-like chaperones0Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0Direct
Nucleotide cyclase0Direct
Translation proteins0Direct
Formate/glycerate dehydrogenase catalytic domain-like0Direct
Cdc48 domain 2-like0Direct
Connexin430Direct
Cap-Gly domain0Direct
Glutathione synthetase ATP-binding domain-like0Direct
LCCL domain0Direct
Sec7 domain0Direct
ENTH/VHS domain0Direct
Class I glutamine amidotransferase-like0Direct
Kazal-type serine protease inhibitors0Direct
Arginase/deacetylase0Direct
Metallo-dependent hydrolases0Direct
Rhodanese/Cell cycle control phosphatase0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
Tubulin C-terminal domain-like0Direct
Tubulin nucleotide-binding domain-like0Direct
Class II aaRS and biotin synthetases0Direct
LDL receptor-like module0Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0Direct
Cysteine proteinases0.00003204Direct
HMG-box0.001112Inherited
Protein kinase-like (PK-like)0.03857Inherited
vWA-like0.04055Inherited
Nucleotide-diphospho-sugar transferases0.06826Inherited
FnI-like domain0.1578Inherited
WD40 repeat-like0.1584Inherited
Cystine-knot cytokines0.2345Inherited
Alkaline phosphatase-like0.2608Inherited
NAD(P)-binding Rossmann-fold domains0.2761Inherited
Cytokine0.2821Inherited
Multidrug efflux transporter AcrB transmembrane domain0.4272Inherited
UBA-like0.6432Inherited
L domain-like0.6853Inherited
Immunoglobulin0.7385Inherited
Homeodomain-like0.8372Inherited
Concanavalin A-like lectins/glucanases0.8763Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51556,51338
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0Direct
    90257,57997
  • 90257 - Myosin rod fragments
  • 57997 - Tropomyosin
  • 0Direct
    55550,55550
  • 55550 - SH2 domain
  • 55550 - SH2 domain
  • 0Direct
    50156,50044
  • 50156 - PDZ domain-like
  • 50044 - SH3-domain
  • 0Direct
    141072,141072
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 0Direct
    57196,90193
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    57903,47370
  • 57903 - FYVE/PHD zinc finger
  • 47370 - Bromodomain
  • 0Direct
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0Direct
    56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0Direct
    54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0Direct
    46938,52087
  • 46938 - CRAL/TRIO N-terminal domain
  • 52087 - CRAL/TRIO domain
  • 0Direct
    52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    52283,51735
  • 52283 - Formate/glycerate dehydrogenase catalytic domain-like
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0Direct
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0Direct
    90193,90193
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    48425,50729
  • 48425 - Sec7 domain
  • 50729 - PH domain-like
  • 0Direct
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0Direct
    46785,46785
  • 46785 - "Winged helix" DNA-binding domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48452,81901
  • 48452 - TPR-like
  • 81901 - HCP-like
  • 0Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0Direct
    57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0Direct
    50729,56112
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    49417,47719
  • 49417 - p53-like transcription factors
  • 47719 - p53 tetramerization domain
  • 0Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50978,50998
  • 50978 - WD40 repeat-like
  • 50998 - Quinoprotein alcohol dehydrogenase-like
  • 0Direct
    55021,56534
  • 55021 - ACT-like
  • 56534 - Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
  • 0Direct
    63825,57196
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 0Direct
    49854,57196
  • 49854 - Spermadhesin, CUB domain
  • 57196 - EGF/Laminin
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    49785,57184
  • 49785 - Galactose-binding domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    81324,81324
  • 81324 - Voltage-gated potassium channels
  • 81324 - Voltage-gated potassium channels
  • 0Direct
    53300,53300
  • 53300 - vWA-like
  • 53300 - vWA-like
  • 0Direct
    57184,57603
  • 57184 - Growth factor receptor domain
  • 57603 - FnI-like domain
  • 0Direct
    57184,57196
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    57196,63825
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 0Direct
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    57362,57362
  • 57362 - BPTI-like
  • 57362 - BPTI-like
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    54001,143791
  • 54001 - Cysteine proteinases
  • 143791 - DUSP-like
  • 0Direct
    57196,49899
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0Direct
    57440,57440
  • 57440 - Kringle-like
  • 57440 - Kringle-like
  • 0.3439Inherited
    57196,49854
  • 57196 - EGF/Laminin
  • 49854 - Spermadhesin, CUB domain
  • 0.3439Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.6566Inherited
    50156,50156
  • 50156 - PDZ domain-like
  • 50156 - PDZ domain-like
  • 0.7166Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,57184,57196
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    57196,90193,90193
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57850,57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0Direct
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    57196,49899,49899
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    57196,57196,90193
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    49854,57196,49854
  • 49854 - Spermadhesin, CUB domain
  • 57196 - EGF/Laminin
  • 49854 - Spermadhesin, CUB domain
  • 0Direct
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    48452,48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0Direct
    52743,49785,57184
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    57196,57184,57196
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    57196,63825,57196
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 0Direct
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0Direct
    54897,52743,49785
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0Direct
    90193,90193,90193
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    57184,57196,57196
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0Direct
    57184,57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    75399,75399,75399
  • 75399 - Plakin repeat
  • 75399 - Plakin repeat
  • 75399 - Plakin repeat
  • 0Direct
    50156,50044,52540
  • 50156 - PDZ domain-like
  • 50044 - SH3-domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    47031,50729,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 50729 - PH domain-like
  • 0Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0Direct
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.3439Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.5256Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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