SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Zebrafish Anatomy (ZA): brainstem

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical group [ZFA:0001512] <5>(171|201) (175|125|60)
+ + + + 4:   whole organism [ZFA:0001094] <8>(265|285) (265|151|71)
+ + + 3:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + 3:   anatomical system [ZFA:0001439] <18>(158|189) (163|119|58)
+ + 2:   nervous system [ZFA:0000396] <9>(53|54) (56|32|16)
+ + 2:   anatomical structure [ZFA:0000037] <16>(268|286) (268|153|73)
+ 1:   central nervous system [ZFA:0000012] <10>(26|25) (28|15|9)
+ 1:   multi-tissue structure [ZFA:0001488] <202>(67|76) (67|50|24)
0:   brainstem [ZFA:0001707] <5>(2|2) (2|2|2)
- 1:   medulla oblongata [ZFA:0000545] <33>(0|0) (0|0|0)
- 1:   tegmentum [ZFA:0000160] <12>(0|0) (0|0|0)
- 1:   brainstem and spinal white matter [ZFA:0000318] <10>(2|2) (2|2|2)
- 1:   caudal mesencephalo-cerebellar tract [ZFA:0000479](0|0) (0|0|0)
- 1:   rostral mesencephalo-cerebellar tract [ZFA:0000579](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Fibronectin type III0.002263Inherited
Immunoglobulin0.004481Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Fibronectin type III0.001563Inherited
I set domains0.007302Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Fibronectin type III0.001425Inherited
Immunoglobulin0.002927Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0000651Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.008829Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0000101Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.003148Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)