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Zebrafish Anatomy (ZA): skeletal muscle cell

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + + + 5:   whole organism [ZFA:0001094] <8>(265|285) (265|151|71)
+ + + + + 5:   cell [ZFA:0009000] <89>(53|68) (55|34|21)
+ + + + + 5:   anatomical group [ZFA:0001512] <5>(171|201) (175|125|60)
+ + + + 4:   electrically active cell [ZFA:0009128] <2>(16|20) (17|13|6)
+ + + + 4:   anatomical system [ZFA:0001439] <18>(158|189) (163|119|58)
+ + + + 4:   anatomical structure [ZFA:0000037] <16>(268|286) (268|153|73)
+ + + 3:   musculature system [ZFA:0000548] <5>(9|12) (11|9|6)
+ + + 3:   electrically responsive cell [ZFA:0009190] <3>(14|17) (15|11|6)
+ + + 3:   portion of tissue [ZFA:0001477] <232>(42|45) (47|31|19)
+ + 2:   muscle [ZFA:0005145] <31>(8|11) (10|8|5)
+ + 2:   muscle cell [ZFA:0009114] <3>(8|10) (9|7|5)
+ 1:   skeletal muscle [ZFA:0005277] <15>(6|8) (7|6|5)
+ 1:   striated muscle cell [ZFA:0005784] <2>(7|8) (8|6|5)
0:   skeletal muscle cell [ZFA:0009115] <2>(6|6) (6|6|5)
- 1:   fast muscle cell [ZFA:0009117] <30>(0|0) (0|0|0)
- 1:   slow muscle cell [ZFA:0009116] <30>(0|2) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL-intermediate domain like0.000001388Direct
GroEL apical domain-like0.00001477Direct
GroEL equatorial domain-like0.00003475Direct
Multidrug efflux transporter AcrB transmembrane domain0.0000721Direct
IP3 receptor type 1 binding core, domain 20.00007251Direct
MIR domain0.000871Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), ATPase domain0.0000001237Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000008205Direct
Group II chaperonin (CCT, TRIC), intermediate domain0.000002388Direct
Multidrug efflux transporter AcrB transmembrane domain0.000201Direct
MIR domain0.0005487Direct
Laminin-type module0.005296Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL-intermediate domain like0.000000782Direct
GroEL apical domain-like0.000008414Direct
GroEL equatorial domain-like0.00001987Direct
Multidrug efflux transporter AcrB transmembrane domain0.00004166Direct
IP3 receptor type 1 binding core, domain 20.00004188Direct
MIR domain0.0005299Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
82109,82109
  • 82109 - MIR domain
  • 82109 - MIR domain
  • 0Direct
    100909,49899
  • 100909 - IP3 receptor type 1 binding core, domain 2
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000000782Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000782Direct
    82109,100909
  • 82109 - MIR domain
  • 100909 - IP3 receptor type 1 binding core, domain 2
  • 0.00004188Direct
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0.00004188Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    82109,100909,49899
  • 82109 - MIR domain
  • 100909 - IP3 receptor type 1 binding core, domain 2
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    82109,82109,100909
  • 82109 - MIR domain
  • 82109 - MIR domain
  • 100909 - IP3 receptor type 1 binding core, domain 2
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000782Direct
    48726,49265,48726
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0.00004188Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0007574Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)