SUPERFAMILY 1.75 HMM library and genome assignments server

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H-NOX domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ligand-binding domain in the NO signalling and Golgi transport [ 111125]
Superfamily:   Ligand-binding domain in the NO signalling and Golgi transport [ 111126] (3)
Family:   H-NOX domain [ 111127]


Family statistics
Genomes (52) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 53 255 2
Proteins 53 255 2


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Least InformativeDirect
Enzyme Commission (EC)Guanylate cyclase0Highly InformativeDirect

Document: EC annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism environmental stimulus response variant0.00991Least InformativeInherited
Worm Phenotype (WP)organism behavior variant0.02532Least InformativeInherited
Worm Phenotype (WP)feeding behavior variant0.00006761Moderately InformativeDirect
Worm Phenotype (WP)carbon dioxide avoidance variant0.00000004879Highly InformativeDirect
Worm Phenotype (WP)pharyngeal pumping irregular0.000000286Highly InformativeDirect
Worm Phenotype (WP)pharyngeal pumping rate variant0.000000473Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)stress response defective0Highly InformativeDirect

Document: FP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Moderately InformativeDirect
Enzyme Commission (EC)Phosphorus-oxygen lyases1Highly InformativeInherited

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Worm Phenotype (WP) · Fly Phenotype (FP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 5 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Ligand-binding domain in the NO signalling and Golgi transport domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Worm Phenotype (WP) · Fly Phenotype (FP) · Enzyme Commission (EC) · Internal database links ]