SUPERFAMILY 1.75 HMM library and genome assignments server

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Hairy Orange domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Orange domain-like [ 158456]
Superfamily:   Orange domain-like [ 158457]
Family:   Hairy Orange domain [ 158458]


Family statistics
Genomes (59) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 75 213 1
Proteins 75 213 1


Disease Ontology (DO)

(
show details) Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)nervous system phenotype0.006375Least InformativeInherited
Mammalian Phenotype (MP)cardiovascular system phenotype0.2119Least InformativeInherited
Mammalian Phenotype (MP)abnormal somatic sensory system morphology0.008527Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cardiovascular development0.01137Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal heart morphology0.05165Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal neuron morphology0.1615Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal heart septum morphology0.001225InformativeInherited
Mammalian Phenotype (MP)abnormal heart development0.00135InformativeInherited
Mammalian Phenotype (MP)increased sensory neuron number0.000002721Highly InformativeDirect
Mammalian Phenotype (MP)abnormal semilunar valve morphology0.000009246Highly InformativeDirect
Mammalian Phenotype (MP)abnormal heart ventricle outflow tract morphology0.00001025Highly InformativeDirect
Mammalian Phenotype (MP)abnormal atrioventricular valve morphology0.00001074Highly InformativeDirect
Mammalian Phenotype (MP)abnormal atrioventricular cushion morphology0.00001427Highly InformativeDirect
Mammalian Phenotype (MP)abnormal heart right ventricle morphology0.0001354Highly InformativeDirect
Mammalian Phenotype (MP)ventricular septal defect0.0002929Highly InformativeDirect

Document: MP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)tagma0Least InformativeDirect
Fly Anatomy (FA)segment0Least InformativeDirect
Fly Anatomy (FA)organ system subdivision0Least InformativeDirect
Fly Anatomy (FA)embryo0.1803Least InformativeInherited
Fly Anatomy (FA)larva0.4565Least InformativeInherited
Fly Anatomy (FA)nervous system0.5658Least InformativeInherited
Fly Anatomy (FA)multi-tissue structure0.5732Least InformativeInherited
Fly Anatomy (FA)somatic cell0.7314Least InformativeInherited
Fly Anatomy (FA)ganglion0.09861Moderately InformativeInherited
Fly Anatomy (FA)embryonic/larval nervous system0.1099Moderately InformativeInherited
Fly Anatomy (FA)central nervous system0.2093Moderately InformativeInherited
Fly Anatomy (FA)neuron0.293Moderately InformativeInherited
Fly Anatomy (FA)embryonic/larval neuron0.0125InformativeInherited
Fly Anatomy (FA)interneuron0.01792InformativeInherited
Fly Anatomy (FA)ventral nerve cord0.09985InformativeInherited
Fly Anatomy (FA)EL neuron0.00001485Highly InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details) Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)embryo0.1689Least InformativeInherited
Xenopus ANatomical entity (XAN)nervous system0.1907Least InformativeInherited
Xenopus ANatomical entity (XAN)head0.2023Least InformativeInherited
Xenopus ANatomical entity (XAN)trunk0.227Least InformativeInherited
Xenopus ANatomical entity (XAN)cavitated compound organ0.4878Least InformativeInherited
Xenopus ANatomical entity (XAN)urogenital system0.6786Least InformativeInherited
Xenopus ANatomical entity (XAN)musculoskeletal system0.0007475Moderately InformativeDirect
Xenopus ANatomical entity (XAN)sensory system0.0008382Moderately InformativeDirect
Xenopus ANatomical entity (XAN)multi-tissue structure0.0008844Moderately InformativeDirect
Xenopus ANatomical entity (XAN)embryonic structure0.004206Moderately InformativeInherited
Xenopus ANatomical entity (XAN)ectoderm0.03936Moderately InformativeInherited
Xenopus ANatomical entity (XAN)brain0.0441Moderately InformativeInherited
Xenopus ANatomical entity (XAN)anatomical direction0.00000532InformativeDirect
Xenopus ANatomical entity (XAN)pharyngeal region0.00001453InformativeDirect
Xenopus ANatomical entity (XAN)mesoderm0.0000178InformativeDirect
Xenopus ANatomical entity (XAN)neural tube0.00002476InformativeDirect
Xenopus ANatomical entity (XAN)spinal cord0.00004216InformativeDirect
Xenopus ANatomical entity (XAN)eye0.0001586InformativeDirect
Xenopus ANatomical entity (XAN)anatomical space0.0003427InformativeDirect
Xenopus ANatomical entity (XAN)neuroectoderm0.0003942InformativeDirect
Xenopus ANatomical entity (XAN)surface structure0.002639InformativeInherited
Xenopus ANatomical entity (XAN)peripheral nervous system0.004244InformativeInherited
Xenopus ANatomical entity (XAN)mesenchyme0.007804InformativeInherited
Xenopus ANatomical entity (XAN)tail0.008641InformativeInherited
Xenopus ANatomical entity (XAN)urinary system0.02995InformativeInherited
Xenopus ANatomical entity (XAN)neural groove0.000002687Highly InformativeDirect
Xenopus ANatomical entity (XAN)anterior neural fold0.0001268Highly InformativeDirect
Xenopus ANatomical entity (XAN)fin0.0001403Highly InformativeDirect
Xenopus ANatomical entity (XAN)pronephric mesenchyme0.0001943Highly InformativeDirect
Xenopus ANatomical entity (XAN)presomitic mesoderm0.0002082Highly InformativeDirect
Xenopus ANatomical entity (XAN)midbrain0.0009488Highly InformativeDirect
Xenopus ANatomical entity (XAN)ganglion0.001023Highly InformativeInherited
Xenopus ANatomical entity (XAN)tail bud0.001348Highly InformativeInherited

Document: XA annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Mouse Phenotype (MP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Orange domain-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Mouse Phenotype (MP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Internal database links ]