SUPERFAMILY 1.75 HMM library and genome assignments server

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Prefoldin family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Long alpha-hairpin [ 46556] (20)
Superfamily:   Prefoldin [ 46579]
Family:   Prefoldin [ 46580] (2)


Family statistics
Genomes (46) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 56 253 3
Proteins 56 253 3


Human Phenotype (HP)

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show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of the eye0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell morphology variant0.00187Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.007903Least InformativeInherited
Worm Phenotype (WP)blast cell physiology variant0.007903Least InformativeInherited
Worm Phenotype (WP)cell organization biogenesis variant0.000008039Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.00005964Moderately InformativeDirect
Worm Phenotype (WP)reproductive system morphology variant0.1401Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.1508Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.4004Moderately InformativeInherited
Worm Phenotype (WP)embryonic cell organization biogenesis variant0.00000006716InformativeDirect
Worm Phenotype (WP)spindle variant0.00003177InformativeDirect
Worm Phenotype (WP)vulva morphology variant0.000229InformativeDirect
Worm Phenotype (WP)nuclear appearance variant0.03932InformativeInherited
Worm Phenotype (WP)pronucleus centrosomes defective early emb0.006522Highly InformativeInherited
Worm Phenotype (WP)nuclear appearance number defective early emb0.006689Highly InformativeInherited
Worm Phenotype (WP)nucleus defective early emb0.006689Highly InformativeInherited
Worm Phenotype (WP)pronuclear morphology defective early emb0.006689Highly InformativeInherited
Worm Phenotype (WP)pronuclear nuclear appearance defective early emb0.007203Highly InformativeInherited
Worm Phenotype (WP)nuclear morphology variation early emb0.007746Highly InformativeInherited

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect
Yeast Phenotype (YP)metabolism and growth0Least InformativeDirect
Yeast Phenotype (YP)chemical compound accumulation0Moderately InformativeDirect
Yeast Phenotype (YP)vegetative growth0Moderately InformativeDirect
Yeast Phenotype (YP)morphology0.008199Moderately InformativeInherited
Yeast Phenotype (YP)intracellular transport0.0001491InformativeDirect
Yeast Phenotype (YP)endocytosis0.000005473Highly InformativeDirect
Yeast Phenotype (YP)cell size0.00003452Highly InformativeDirect

Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)somatic cell0Least InformativeDirect
Fly Anatomy (FA)somatic precursor cell0Moderately InformativeDirect
Fly Anatomy (FA)somatic stem cell0InformativeDirect
Fly Anatomy (FA)type I neuroblast0Highly InformativeDirect
Fly Anatomy (FA)type II neuroblast0Highly InformativeDirect

Document: FA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)ectoderm0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)anatomical entity in vitro0.0004954InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Prefoldin domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]