SUPERFAMILY 1.75 HMM library and genome assignments server

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Myb/SANT domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   DNA/RNA-binding 3-helical bundle [ 46688] (14)
Superfamily:   Homeodomain-like [ 46689] (19)
Family:   Myb/SANT domain [ 46739] (15)


Family statistics
Genomes (131) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 620 1,514 10
Proteins 620 1,514 10


Mouse Phenotype (MP)

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show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)hematopoietic system phenotype0.02089Least InformativeInherited
Mammalian Phenotype (MP)immune system phenotype0.136Least InformativeInherited
Mammalian Phenotype (MP)abnormal blood cell morphology/development0.05309Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal B cell morphology0.05575Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal blood cell morphology0.106Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal myeloid cell morphology0.2112Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal behavior1Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal bone marrow cell morphology/development0.008877InformativeInherited
Mammalian Phenotype (MP)abnormal B cell differentiation0.286InformativeInherited
Mammalian Phenotype (MP)abnormal megakaryocyte morphology0.0007167Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell development variant0.1694Least InformativeInherited
Worm Phenotype (WP)organ system development variant0.04214Moderately InformativeInherited
Worm Phenotype (WP)cell fate specification variant0.0007015InformativeDirect
Worm Phenotype (WP)epithelial system development variant0.001101InformativeInherited
Worm Phenotype (WP)growth rate variant0.0000724Highly InformativeDirect
Worm Phenotype (WP)exploded through vulva0.0007337Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect
Yeast Phenotype (YP)metabolism and growth0Least InformativeDirect

Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)tagma0Least InformativeDirect
Fly Anatomy (FA)segment0Least InformativeDirect
Fly Anatomy (FA)adult0Least InformativeDirect
Fly Anatomy (FA)multi-tissue structure0Least InformativeDirect
Fly Anatomy (FA)organ system subdivision0Least InformativeDirect
Fly Anatomy (FA)somatic cell0Least InformativeDirect
Fly Anatomy (FA)adult mesothoracic segment0Moderately InformativeDirect
Fly Anatomy (FA)adult integumentary system0Moderately InformativeDirect
Fly Anatomy (FA)tagmatic subdivision of integument0Moderately InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)cell0.03976Least InformativeInherited
Zebrafish Anatomy (ZA)hematopoietic cell0.000136InformativeDirect
Zebrafish Anatomy (ZA)motile cell0.001286InformativeInherited
Zebrafish Anatomy (ZA)immune system0.001709InformativeInherited
Zebrafish Anatomy (ZA)granulocyte0.00009818Highly InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)root1Least InformativeInherited
Plant ANatomical entity (PAN)microsporophyll1Least InformativeInherited
Plant ANatomical entity (PAN)androecium1Least InformativeInherited
Plant ANatomical entity (PAN)sporangium1Least InformativeInherited
Plant ANatomical entity (PAN)vascular system0.000001166InformativeDirect
Plant ANatomical entity (PAN)portion of ground tissue0.00297InformativeInherited
Plant ANatomical entity (PAN)lateral root0.0002173Highly InformativeDirect
Plant ANatomical entity (PAN)anther0.002107Highly InformativeInherited
Plant ANatomical entity (PAN)trichome0.004065Highly InformativeInherited

Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 187 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Homeodomain-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]