SUPERFAMILY 1.75 HMM library and genome assignments server

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ARID domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   DNA/RNA-binding 3-helical bundle [ 46688] (14)
Superfamily:   ARID-like [ 46774]
Family:   ARID domain [ 46775] (4)


Family statistics
Genomes (167) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 754 2,357 5
Proteins 754 2,356 5


Human Phenotype (HP)

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show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of the genitourinary system0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the musculature0.07164Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the face0.08194Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of nervous system morphology0.0896Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of skeletal morphology0.09644Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the eye0.09814Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of limbs0.1085Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0.2092Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the integument0.2106Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the cardiovascular system0.2195Least InformativeInherited
Phenotypic Abnormality (PA)Abnormal ocular adnexa morphology0.002642Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of skull size0.002859Moderately InformativeInherited
Phenotypic Abnormality (PA)Aplasia/Hypoplasia involving the central nervous system0.004922Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the nose0.006402Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of forebrain morphology0.009187Moderately InformativeInherited
Phenotypic Abnormality (PA)Neurodevelopmental delay0.01589Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the ear0.02121Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of skin adnexa morphology0.02235Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal joint morphology0.03357Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the upper limb0.0339Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of limb bone morphology0.03539Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal eye physiology0.03743Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the lower limb0.04178Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of skeletal physiology0.0814Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal skeletal muscle morphology0.2006Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the upper urinary tract0.3427Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the vertebral column0.389Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal reproductive system morphology0.6245Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal oral cavity morphology1Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the palm0.0001128InformativeDirect
Phenotypic Abnormality (PA)Abnormal conjugate eye movement0.0003999InformativeDirect
Phenotypic Abnormality (PA)Abnormal lip morphology0.0004922InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the outer ear0.0007405InformativeDirect
Phenotypic Abnormality (PA)Microcephaly0.0007807InformativeDirect
Phenotypic Abnormality (PA)Abnormality of male external genitalia0.0008291InformativeDirect
Phenotypic Abnormality (PA)Abnormal finger phalanx morphology0.001413InformativeInherited
Phenotypic Abnormality (PA)Abnormal hair quantity0.001497InformativeInherited
Phenotypic Abnormality (PA)Abnormal lower limb bone morphology0.001531InformativeInherited
Phenotypic Abnormality (PA)Aplasia/hypoplasia of the extremities0.001619InformativeInherited
Phenotypic Abnormality (PA)Regional abnormality of skin0.007597InformativeInherited
Phenotypic Abnormality (PA)Vascular skin abnormality0.01115InformativeInherited
Phenotypic Abnormality (PA)Abnormal cerebellum morphology0.02181InformativeInherited
Phenotypic Abnormality (PA)Joint hypermobility0.02633InformativeInherited
Phenotypic Abnormality (PA)Abnormality of lower limb joint0.04322InformativeInherited
Phenotypic Abnormality (PA)Abnormal renal morphology0.04651InformativeInherited
Phenotypic Abnormality (PA)Joint dislocation0.0572InformativeInherited
Phenotypic Abnormality (PA)Abnormality of toe0.05934InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the cerebral subcortex0.1014InformativeInherited
Phenotypic Abnormality (PA)Slow-growing hair0.000002494Highly InformativeDirect
Phenotypic Abnormality (PA)Spina bifida occulta0.00002464Highly InformativeDirect
Phenotypic Abnormality (PA)Aplasia/Hypoplasia of the phalanges of the hand0.00002622Highly InformativeDirect
Phenotypic Abnormality (PA)Aplasia/Hypoplasia involving bones of the feet0.00003572Highly InformativeDirect
Phenotypic Abnormality (PA)Upper extremity joint dislocation0.00004153Highly InformativeDirect
Phenotypic Abnormality (PA)Short finger0.00005077Highly InformativeDirect
Phenotypic Abnormality (PA)Cryptorchidism0.00009044Highly InformativeDirect
Phenotypic Abnormality (PA)Delayed speech and language development0.00009298Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the phalanges of the toes0.0001072Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the femoral neck0.000133Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the diaphragm0.0001415Highly InformativeDirect
Phenotypic Abnormality (PA)Hypoplasia of the corpus callosum0.0001765Highly InformativeDirect
Phenotypic Abnormality (PA)Wide mouth0.0001768Highly InformativeDirect
Phenotypic Abnormality (PA)Dilatation of the renal pelvis0.0002827Highly InformativeDirect
Phenotypic Abnormality (PA)Aplasia/Hypoplasia of the cerebellar vermis0.0003313Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the nasal bridge0.0004323Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormal dermatoglyphics0.0006768Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the philtrum0.0009103Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the knee0.002093Highly InformativeInherited
Phenotypic Abnormality (PA)Abnormal eyelash morphology0.01344Highly InformativeInherited
Phenotypic Abnormality (PA)Abnormal 5th finger morphology0.05965Highly InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the nail0.06018Highly InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the cerebral ventricles0.08294Highly InformativeInherited
Phenotypic Abnormality (PA)Agenesis of corpus callosum0.08705Highly InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the external nose0.1294Highly InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the elbow0.1438Highly InformativeInherited

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)hematopoietic system phenotype0.003977Least InformativeInherited
Mammalian Phenotype (MP)abnormal hematopoietic stem cell morphology0.0002419Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)slow growth0Least InformativeDirect
Worm Phenotype (WP)larval lethal0Least InformativeDirect
Worm Phenotype (WP)larval arrest0Least InformativeDirect
Worm Phenotype (WP)sterile progeny0Least InformativeDirect
Worm Phenotype (WP)organism stress response variant0.00000937InformativeDirect
Worm Phenotype (WP)organism UV response variant0.0000000004868Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)increased mortality0Least InformativeDirect
Fly Phenotype (FP)modifier of variegation0.00004123InformativeDirect
Fly Phenotype (FP)some die during pupal stage0.0000642Highly InformativeDirect

Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)tagma0Least InformativeDirect
Fly Anatomy (FA)segment0Least InformativeDirect
Fly Anatomy (FA)adult0Least InformativeDirect
Fly Anatomy (FA)organ system subdivision0Least InformativeDirect

Document: FA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)embryo0.08673Least InformativeInherited
Xenopus ANatomical entity (XAN)tissue0.101Least InformativeInherited
Xenopus ANatomical entity (XAN)urogenital system0.1521Least InformativeInherited
Xenopus ANatomical entity (XAN)trunk0.2711Least InformativeInherited
Xenopus ANatomical entity (XAN)germ cell0.0007164Moderately InformativeDirect
Xenopus ANatomical entity (XAN)multi-tissue structure0.008523Moderately InformativeInherited
Xenopus ANatomical entity (XAN)anatomical space0.01173InformativeInherited
Xenopus ANatomical entity (XAN)urinary system0.02113InformativeInherited
Xenopus ANatomical entity (XAN)pronephric tubule0.0005679Highly InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)seed0Least InformativeDirect
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 10 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a ARID-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]