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Ribosomal protein L11, C-terminal domain superfamily
SCOP classification
Superfamily statistics
Functional annotation
| General category | Information |
| Detailed category | Translation |
Function annotation of SCOP domain superfamilies
InterPro annotation
| Cross references | IPR000911 SSF46906 Protein matches |
| Abstract | Ribosomal protein L11 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L11
is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the
basis of sequence similarities [ 2167467], groups bacteria, plant chloroplast, read
algal chloroplast, cyanelle and archaeabacterial L11; and mammalian, plant and yeast L12 (YL15). L11 is
a protein of 140 to 165 amino-acid residues. In E. coli, the C-terminal half of L11 has been
shown [2483975] to be in an extended and loosely folded conformation and is likely to be buried
within the ribosomal structure. |
InterPro database
PDBeMotif information about ligands, sequence and structure motifs
PDBeMotif resource
Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation ]
Internal database links
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Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry
out SCOP domain assignments to all genomes at the superfamily level.
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Alignments of sequences to 3 models
in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical
are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.
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Browse and view proteins in genomes which have
different domain combinations including a Ribosomal protein L11, C-terminal domain domain.
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Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.
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Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.
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There are 3 hidden Markov models representing the Ribosomal protein L11, C-terminal domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.
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Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Internal database links ]
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