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Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases [ 47322]
Superfamily:   Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases [ 47323]
Family:   Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases [ 47324] (6)


Family statistics
Genomes (3,030) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 6,863 53,223 14
Proteins 6,863 53,219 14


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Least InformativeDirect
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compoun0Moderately InformativeDirect
Enzyme Commission (EC)Forming carbon-nitrogen bonds1Moderately InformativeInherited
Enzyme Commission (EC)Valine--tRNA ligase0Highly InformativeDirect
Enzyme Commission (EC)Methionine--tRNA ligase0Highly InformativeDirect
Enzyme Commission (EC)Acid--ammonia (or amide) ligases (amide synthases)0.9667Highly InformativeInherited

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the digestive system0.01251Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of metabolism/homeostasis0.4705Least InformativeInherited
Phenotypic Abnormality (PA)Neurodevelopmental delay0.0006699Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of digestive system physiology0.0009463Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormal homeostasis0.1212Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the abdominal organs0.7471Moderately InformativeInherited
Phenotypic Abnormality (PA)Acidosis0.0002309InformativeDirect
Phenotypic Abnormality (PA)Abnormal liver morphology0.1564InformativeInherited
Phenotypic Abnormality (PA)Decreased liver function0.0002271Highly InformativeDirect
Phenotypic Abnormality (PA)Hepatic steatosis0.0008134Highly InformativeDirect

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell development variant0.00006431Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.0003606Least InformativeDirect
Worm Phenotype (WP)blast cell physiology variant0.0003606Least InformativeDirect
Worm Phenotype (WP)cell morphology variant0.02236Least InformativeInherited
Worm Phenotype (WP)organism metabolism processing variant0.05573Least InformativeInherited
Worm Phenotype (WP)level of transgene expression variant0.0008291Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.009011Moderately InformativeInherited
Worm Phenotype (WP)germ cell development variant0.01041Moderately InformativeInherited
Worm Phenotype (WP)reproductive system morphology variant0.06389Moderately InformativeInherited
Worm Phenotype (WP)protein expression variant0.1713Moderately InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.1914Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.2792Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.8204Moderately InformativeInherited
Worm Phenotype (WP)transgene expression increased0.0000248InformativeDirect
Worm Phenotype (WP)pachytene progression during oogenesis variant0.000266InformativeDirect
Worm Phenotype (WP)diplotene progression during oogenesis variant0.000266InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.000867InformativeDirect
Worm Phenotype (WP)rachis morphology variant0.0009147InformativeDirect
Worm Phenotype (WP)level of protein expression variant0.00139InformativeInherited
Worm Phenotype (WP)endocytic transport defect0.002749InformativeInherited
Worm Phenotype (WP)oocyte morphology variant0.003816InformativeInherited
Worm Phenotype (WP)oocyte physiology variant0.02096InformativeInherited
Worm Phenotype (WP)organism pathogen response variant0.2271InformativeInherited
Worm Phenotype (WP)hypoxia response variant0.0000000000008108Highly InformativeDirect
Worm Phenotype (WP)cell differentiation variant0.0000000006165Highly InformativeDirect
Worm Phenotype (WP)pleiotropic defects severe early emb0.00001149Highly InformativeDirect
Worm Phenotype (WP)oocyte number decreased0.0002609Highly InformativeDirect
Worm Phenotype (WP)protein expression reduced0.0005594Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect

Document: YP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)larva0Least InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)nervous system0Least InformativeDirect
Zebrafish Anatomy (ZA)cavitated compound organ0Least InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)0 seed germination stage0.000006253InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Moderately InformativeDirect
Enzyme Commission (EC)Forming carbon-oxygen bonds0InformativeDirect
Enzyme Commission (EC)Forming carbon-nitrogen bonds1InformativeInherited
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compounds0Highly InformativeDirect
Enzyme Commission (EC)Acid--ammonia (or amine) ligases (amide synthases)0.9873Highly InformativeInherited

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 17 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]