SUPERFAMILY 1.75 HMM library and genome assignments server

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DNA polymerase beta, N-terminal domain-like family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   SAM domain-like [ 47768] (16)
Superfamily:   DNA polymerase beta, N-terminal domain-like [ 47802]
Family:   DNA polymerase beta, N-terminal domain-like [ 47803] (3)


Family statistics
Genomes (88) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 255 585 13
Proteins 255 585 13


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Nucleotidyltransferases0Least InformativeDirect
Enzyme Commission (EC)DNA-directed DNA polymerase0.000000000001565InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details) Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)immune system phenotype0Least InformativeDirect
Mammalian Phenotype (MP)hematopoietic system phenotype0.02734Least InformativeInherited
Mammalian Phenotype (MP)cellular phenotype0.1821Least InformativeInherited
Mammalian Phenotype (MP)abnormal B cell morphology0.000059Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal blood cell morphology/development0.0004912Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal lymphocyte cell number0.0007482Moderately InformativeDirect
Mammalian Phenotype (MP)decreased hematopoietic cell number0.001518Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal blood cell morphology0.003128Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal B cell differentiation0.000002995InformativeDirect
Mammalian Phenotype (MP)abnormal metabolism0.003765InformativeInherited
Mammalian Phenotype (MP)abnormal immunoglobulin V(D)J recombination0.000000000002932Highly InformativeDirect
Mammalian Phenotype (MP)abnormal DNA repair0.00000237Highly InformativeDirect

Document: MP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)testis0Moderately InformativeDirect

Document: XA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferases0Least InformativeDirect
Enzyme Commission (EC)Nucleotidyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)DNA-directed DNA polymerase0.000000000000007594InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Xenopus Anatomy (XA) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 6 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a DNA polymerase beta, N-terminal domain-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · Internal database links ]