SUPERFAMILY 1.75 HMM library and genome assignments server

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Hemocyanin middle domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Di-copper centre-containing domain [ 48055]
Superfamily:   Di-copper centre-containing domain [ 48056] (2)
Family:   Hemocyanin middle domain [ 48057] (2)


Family statistics
Genomes (44) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 283 2,013 6
Proteins 269 1,704 6


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0Least InformativeDirect
Enzyme Commission (EC)Acting on paired donors, with incorporation or red0Moderately InformativeDirect

Document: EC annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism environmental stimulus response variant0.01285Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.01484Least InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0.0007595Moderately InformativeDirect
Worm Phenotype (WP)organism stress response variant0.001837Moderately InformativeInherited
Worm Phenotype (WP)cell stress response variant0.000005367InformativeDirect
Worm Phenotype (WP)germ cell physiology variant0.00008361InformativeDirect
Worm Phenotype (WP)cell ionizing radiation response variant0.0000002962Highly InformativeDirect

Document: WP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0Least InformativeDirect
Enzyme Commission (EC)Acting on paired donors, with incorporation or reduction of molecular oxygen. The oxygen incorporate0InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Worm Phenotype (WP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 10 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Di-copper centre-containing domain domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Worm Phenotype (WP) · Enzyme Commission (EC) · Internal database links ]