SUPERFAMILY 1.75 HMM library and genome assignments server

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Transducin (heterotrimeric G protein), gamma chain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Non-globular all-alpha subunits of globular proteins [ 48661] (14)
Superfamily:   Transducin (heterotrimeric G protein), gamma chain [ 48670]
Family:   Transducin (heterotrimeric G protein), gamma chain [ 48671]


Family statistics
Genomes (65) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 294 532 8
Proteins 294 532 8


Mouse Phenotype (MP)

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show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)abnormal eye physiology0.006853InformativeInherited
Mammalian Phenotype (MP)abnormal eye electrophysiology0.0004634Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)slow growth0Least InformativeDirect
Worm Phenotype (WP)larval lethal0Least InformativeDirect
Worm Phenotype (WP)larval arrest0Least InformativeDirect
Worm Phenotype (WP)organism behavior variant0Least InformativeDirect
Worm Phenotype (WP)sterile progeny0Least InformativeDirect
Worm Phenotype (WP)chemical response variant0Moderately InformativeDirect
Worm Phenotype (WP)locomotion variant0Moderately InformativeDirect
Worm Phenotype (WP)movement variant0Moderately InformativeDirect
Worm Phenotype (WP)body region morphology variant0.001771Moderately InformativeInherited
Worm Phenotype (WP)organism segment morphology variant0.001771Moderately InformativeInherited
Worm Phenotype (WP)developmental morphology variant0.001777Moderately InformativeInherited
Worm Phenotype (WP)adult body morphology variant0.001782Moderately InformativeInherited
Worm Phenotype (WP)body morphology variant0.001874Moderately InformativeInherited
Worm Phenotype (WP)chemotaxis variant0InformativeDirect
Worm Phenotype (WP)tail bend angle variant0.0000007844InformativeDirect
Worm Phenotype (WP)head movement variant0.000001244InformativeDirect
Worm Phenotype (WP)directionality variant0.000001955InformativeDirect
Worm Phenotype (WP)body bend variant0.000002878InformativeDirect
Worm Phenotype (WP)body posture variant0.0001435InformativeDirect
Worm Phenotype (WP)foraging behavior variant0.0005922InformativeDirect
Worm Phenotype (WP)body posture wavelength variant0.0000005055Highly InformativeDirect
Worm Phenotype (WP)path curvature variant0.0000005337Highly InformativeDirect
Worm Phenotype (WP)amplitude of sinusoidal movement variant0.000001271Highly InformativeDirect
Worm Phenotype (WP)frequency of body bend variant0.000001355Highly InformativeDirect

Document: WP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus DEvelopment stage (XDE)post-embryonic stage0Least InformativeDirect

Document: XA annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Mouse Phenotype (MP) · Worm Phenotype (WP) · Xenopus Anatomy (XA) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Transducin (heterotrimeric G protein), gamma chain domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Mouse Phenotype (MP) · Worm Phenotype (WP) · Xenopus Anatomy (XA) · Internal database links ]