SUPERFAMILY 1.73 HMM library and genome assignments server


Alpha-macroglobulin receptor domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (165)
Fold:   Common fold of diphtheria toxin/transcription factors/cytochrome f [ 49379] (10)
  sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
Superfamily:   Alpha-macroglobulin receptor domain [ 49410]
Families:   Alpha-macroglobulin receptor domain [ 49411] (2)


Superfamily statistics
Genomes (90) UniProt 15.0 PDB chains (SCOP 1.73)
Domains 839 536 3
Proteins 836 534 3


Functional annotation
General category Regulation
Detailed category Receptor activity

Function annotation of SCOP domain superfamilies
InterPro annotation
Cross references IPR009048 SSF49410 Protein matches
Abstract

This entry represents the receptor-binding domain (RBD) of alpha-2-macroglobulin proteins. The RBD is located at the C-terminus, its structure having an immunoglobulin-like fold consists of a sandwich of nine strands in two sheets with a Greek-key topology [PubMed11106161, PubMed9634697].

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [PubMed2473064], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance [PubMed2472396]. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [PubMed2469470] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation [PubMed2430968]. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [PubMed9914899, PubMed10426429].


InterPro database

PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

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Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Alpha-macroglobulin receptor domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the Alpha-macroglobulin receptor domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Internal database links ]