SUPERFAMILY 1.75 HMM library and genome assignments server

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Spermadhesin, CUB domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   CUB-like [ 49853] (3)
Superfamily:   Spermadhesin, CUB domain [ 49854]
Family:   Spermadhesin, CUB domain [ 49855] (5)


Family statistics
Genomes (71) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 840 2,179 8
Proteins 597 1,584 7


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0Least InformativeDirect
Enzyme Commission (EC)Serine endopeptidases0.00006499Moderately InformativeDirect
Enzyme Commission (EC)Metalloendopeptidases0.0000000002308InformativeDirect
Enzyme Commission (EC)Complement subcomponent C1s0.000000000003383Highly InformativeDirect
Enzyme Commission (EC)Complement subcomponent C1r0.000000000003383Highly InformativeDirect

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of the immune system0.6907Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of immune system physiology0.6425Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of complement system0.0001562InformativeDirect
Phenotypic Abnormality (PA)Autoimmunity0.02175Highly InformativeInherited

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)nervous system phenotype0.4969Least InformativeInherited
Mammalian Phenotype (MP)abnormal bone structure0.2683Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal synaptic transmission0.2909Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal muscle morphology0.4222Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal innervation0.03075InformativeInherited
Mammalian Phenotype (MP)abnormal CNS synaptic transmission0.175InformativeInherited
Mammalian Phenotype (MP)abnormal bone ossification0.2362InformativeInherited
Mammalian Phenotype (MP)decreased excitatory postsynaptic current amplitude0.0001848Highly InformativeDirect
Mammalian Phenotype (MP)abnormal bone volume0.0007295Highly InformativeDirect
Mammalian Phenotype (MP)abnormal tendon morphology0.000742Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)pericellular component development variant0.000159Moderately InformativeDirect

Document: WP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details) Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Acting on peptide bonds (peptidases)0Moderately InformativeDirect
Enzyme Commission (EC)Serine endopeptidases0.0000000002468InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 12 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Spermadhesin, CUB domain domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · Internal database links ]