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Sm motif of small nuclear ribonucleoproteins, SNRNP family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   Sm-like fold [ 50181] (5)
Superfamily:   Sm-like ribonucleoproteins [ 50182] (6)
Family:   Sm motif of small nuclear ribonucleoproteins, SNRNP [ 50183] (8)


Family statistics
Genomes (498) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 1,407 3,326 18
Proteins 1,405 3,323 18


Disease Ontology (DO)

(
show details) Document: DO annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell morphology variant0.0000129Least InformativeDirect
Worm Phenotype (WP)cell development variant0.00002415Least InformativeDirect
Worm Phenotype (WP)organism behavior variant0.00004126Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.01814Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.03476Least InformativeInherited
Worm Phenotype (WP)blast cell physiology variant0.03476Least InformativeInherited
Worm Phenotype (WP)germ cell development variant0.0000007283Moderately InformativeDirect
Worm Phenotype (WP)cell type morphology variant0.0000007789Moderately InformativeDirect
Worm Phenotype (WP)organ system development variant0.000003676Moderately InformativeDirect
Worm Phenotype (WP)pattern of transgene expression variant0.00008961Moderately InformativeDirect
Worm Phenotype (WP)protein protein interaction variant0.0004439Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.0009373Moderately InformativeDirect
Worm Phenotype (WP)reproductive system morphology variant0.001563Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.004128Moderately InformativeInherited
Worm Phenotype (WP)body region morphology variant0.005385Moderately InformativeInherited
Worm Phenotype (WP)organism segment morphology variant0.005385Moderately InformativeInherited
Worm Phenotype (WP)developmental morphology variant0.00541Moderately InformativeInherited
Worm Phenotype (WP)adult body morphology variant0.005437Moderately InformativeInherited
Worm Phenotype (WP)body morphology variant0.005849Moderately InformativeInherited
Worm Phenotype (WP)protein expression variant0.006598Moderately InformativeInherited
Worm Phenotype (WP)cell death variant0.009988Moderately InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.3164Moderately InformativeInherited
Worm Phenotype (WP)cell organization biogenesis variant0.8104Moderately InformativeInherited
Worm Phenotype (WP)cell number increased0.000000000004416InformativeDirect
Worm Phenotype (WP)sick0.00000001865InformativeDirect
Worm Phenotype (WP)pachytene progression during oogenesis variant0.0000000557InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.0000004821InformativeDirect
Worm Phenotype (WP)rachis morphology variant0.0000005324InformativeDirect
Worm Phenotype (WP)avoids bacterial lawn0.0000007626InformativeDirect
Worm Phenotype (WP)pattern protein expression variant0.0000009594InformativeDirect
Worm Phenotype (WP)alimentary system development variant0.000002989InformativeDirect
Worm Phenotype (WP)oocyte physiology variant0.0000352InformativeDirect
Worm Phenotype (WP)vesicle morphology variant0.00009257InformativeDirect
Worm Phenotype (WP)cell fate specification variant0.0001433InformativeDirect
Worm Phenotype (WP)endocytic transport defect0.0001683InformativeDirect
Worm Phenotype (WP)vulva development variant0.0009085InformativeDirect
Worm Phenotype (WP)brood size variant0.0009406InformativeDirect
Worm Phenotype (WP)cell component localization variant0.0357InformativeInherited
Worm Phenotype (WP)mitosis variant0.04837InformativeInherited
Worm Phenotype (WP)meiotic chromosome organization variant0.3807InformativeInherited
Worm Phenotype (WP)cell proliferation increased0.000000000000005296Highly InformativeDirect
Worm Phenotype (WP)intestinal development variant0.000000000007276Highly InformativeDirect
Worm Phenotype (WP)multivulva0.0000000001398Highly InformativeDirect
Worm Phenotype (WP)embryonic arrest0.0000000001516Highly InformativeDirect
Worm Phenotype (WP)RAB-11 recycling endosome localization variant0.00001108Highly InformativeDirect
Worm Phenotype (WP)no oocytes0.00005618Highly InformativeDirect
Worm Phenotype (WP)organism pigmentation variant0.0001618Highly InformativeDirect
Worm Phenotype (WP)cell secretion variant0.0002364Highly InformativeDirect
Worm Phenotype (WP)chromosome condensation variant0.0003041Highly InformativeDirect
Worm Phenotype (WP)cell membrane organization biogenesis variant0.0008654Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)germ cell0.00003347Moderately InformativeDirect
Xenopus ANatomical entity (XAN)anatomical entity in vitro0.00003356InformativeDirect
Xenopus DEvelopment stage (XDE)unfertilized egg stage0.0009207Highly InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Worm Phenotype (WP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 60 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Sm-like ribonucleoproteins domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Worm Phenotype (WP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]