SUPERFAMILY 1.75 HMM library and genome assignments server

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Anticodon-binding domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   OB-fold [ 50198] (16)
Superfamily:   Nucleic acid-binding proteins [ 50249] (16)
Family:   Anticodon-binding domain [ 50250] (2)


Family statistics
Genomes (1,452) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 2,394 16,515 10
Proteins 2,394 16,515 10


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Least InformativeDirect
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compoun0Moderately InformativeDirect
Enzyme Commission (EC)Aminoacyltransferases0.000000000004217InformativeDirect

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of the musculature0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system morphology0Least InformativeDirect
Phenotypic Abnormality (PA)Neurodevelopmental delay0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of movement0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormal reflex0InformativeDirect

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)slow growth0Least InformativeDirect
Worm Phenotype (WP)larval arrest0Least InformativeDirect
Worm Phenotype (WP)cell morphology variant0.00584Least InformativeInherited
Worm Phenotype (WP)cell development variant0.007349Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.01588Least InformativeInherited
Worm Phenotype (WP)blast cell physiology variant0.01588Least InformativeInherited
Worm Phenotype (WP)organism metabolism processing variant0.07538Least InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.00009106Moderately InformativeDirect
Worm Phenotype (WP)cell organization biogenesis variant0.0001459Moderately InformativeDirect
Worm Phenotype (WP)cell division variant0.0005217Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.000559Moderately InformativeDirect
Worm Phenotype (WP)germ cell development variant0.0006386Moderately InformativeDirect
Worm Phenotype (WP)reproductive system morphology variant0.000777Moderately InformativeDirect
Worm Phenotype (WP)level of transgene expression variant0.001991Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.002074Moderately InformativeInherited
Worm Phenotype (WP)pachytene progression during oogenesis variant0.000001615InformativeDirect
Worm Phenotype (WP)diplotene progression during oogenesis variant0.000001615InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.000005668InformativeDirect
Worm Phenotype (WP)rachis morphology variant0.000006011InformativeDirect
Worm Phenotype (WP)oocyte morphology variant0.00002847InformativeDirect
Worm Phenotype (WP)transgene expression increased0.0002414InformativeDirect
Worm Phenotype (WP)cell differentiation variant0.000000009474Highly InformativeDirect
Worm Phenotype (WP)diplotene region organization variant0.0000002857Highly InformativeDirect
Worm Phenotype (WP)oocyte number decreased0.000001583Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)tail region0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)tail0InformativeDirect
Xenopus DEvelopment stage (XDE)post-embryonic stage0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)sporangium0Least InformativeDirect
Plant ANatomical entity (PAN)microgametophyte0Least InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferases1Least InformativeInherited
Enzyme Commission (EC)Ligases0Moderately InformativeDirect
Enzyme Commission (EC)Acyltransferases1Moderately InformativeInherited
Enzyme Commission (EC)Forming carbon-oxygen bonds0InformativeDirect
Enzyme Commission (EC)Aminoacyltransferases0.007996InformativeInherited
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compounds0Highly InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 186 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Nucleic acid-binding proteins domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]