SUPERFAMILY 1.75 HMM library and genome assignments server

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Fatty acid binding protein-like family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   Lipocalins [ 50813]
Superfamily:   Lipocalins [ 50814] (9)
Family:   Fatty acid binding protein-like [ 50847] (17)


Family statistics
Genomes (124) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 1,237 3,398 42
Proteins 1,235 3,376 42


Disease Ontology (DO)

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show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0.1422Least InformativeInherited
Disease Ontology (DO)disease of metabolism0.03742Moderately InformativeInherited
Disease Ontology (DO)disease of mental health0.1046Moderately InformativeInherited
Disease Ontology (DO)familial hyperlipidemia0.0001016InformativeDirect
Disease Ontology (DO)urinary system cancer0.002823InformativeInherited
Disease Ontology (DO)bipolar disorder0.0008188Highly InformativeDirect

Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)abnormal homeostasis0.02473Least InformativeInherited
Mammalian Phenotype (MP)cellular phenotype0.7047Least InformativeInherited
Mammalian Phenotype (MP)abnormal lipid homeostasis0.002874Moderately InformativeInherited
Mammalian Phenotype (MP)liver/biliary system phenotype0.003405Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal muscle physiology0.1723Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal triglyceride level0.09263InformativeInherited
Mammalian Phenotype (MP)abnormal sterol level0.4341InformativeInherited
Mammalian Phenotype (MP)abnormal cholesterol homeostasis0.5114InformativeInherited
Mammalian Phenotype (MP)abnormal fat-soluble vitamin level0.00001169Highly InformativeDirect
Mammalian Phenotype (MP)decreased triglyceride level0.00006139Highly InformativeDirect
Mammalian Phenotype (MP)small liver0.0003646Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0.000309Least InformativeDirect
Worm Phenotype (WP)organism environmental stimulus response variant0.09086Least InformativeInherited
Worm Phenotype (WP)organism stress response variant0.07677Moderately InformativeInherited
Worm Phenotype (WP)chemical response variant0.5995Moderately InformativeInherited
Worm Phenotype (WP)fat content variant0.00000000000002309InformativeDirect
Worm Phenotype (WP)chemical hypersensitive0.005647InformativeInherited
Worm Phenotype (WP)fat content increased0.00003861Highly InformativeDirect
Worm Phenotype (WP)paraquat response variant0.0000934Highly InformativeDirect
Worm Phenotype (WP)organism pigmentation variant0.001793Highly InformativeInherited

Document: WP annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details) Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 123 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Lipocalins domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Internal database links ]