SUPERFAMILY 1.75 HMM library and genome assignments server

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Fatty acid binding protein-like family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   Lipocalins [ 50813]
Superfamily:   Lipocalins [ 50814] (9)
Family:   Fatty acid binding protein-like [ 50847] (17)


Family statistics
Genomes (124) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 1,237 3,398 42
Proteins 1,235 3,376 42


Disease Ontology (DO)

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show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0.1422Least InformativeInherited
Disease Ontology (DO)disease of metabolism0.03742Moderately InformativeInherited
Disease Ontology (DO)disease of mental health0.1046Moderately InformativeInherited
Disease Ontology (DO)familial hyperlipidemia0.0001016InformativeDirect
Disease Ontology (DO)urinary system cancer0.002823InformativeInherited
Disease Ontology (DO)bipolar disorder0.0008188Highly InformativeDirect

Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)abnormal homeostasis0.02469Least InformativeInherited
Mammalian Phenotype (MP)cellular phenotype0.7049Least InformativeInherited
Mammalian Phenotype (MP)abnormal lipid homeostasis0.00288Moderately InformativeInherited
Mammalian Phenotype (MP)liver/biliary system phenotype0.003407Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal muscle physiology0.1723Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal triglyceride level0.09261InformativeInherited
Mammalian Phenotype (MP)abnormal sterol level0.434InformativeInherited
Mammalian Phenotype (MP)abnormal cholesterol homeostasis0.5114InformativeInherited
Mammalian Phenotype (MP)abnormal fat-soluble vitamin level0.0000117Highly InformativeDirect
Mammalian Phenotype (MP)decreased triglyceride level0.00006145Highly InformativeDirect
Mammalian Phenotype (MP)small liver0.0003646Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0.0002164Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.1882Least InformativeInherited
Worm Phenotype (WP)blast cell physiology variant0.1882Least InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0.004554Moderately InformativeInherited
Worm Phenotype (WP)body region morphology variant0.2005Moderately InformativeInherited
Worm Phenotype (WP)organism segment morphology variant0.2005Moderately InformativeInherited
Worm Phenotype (WP)developmental morphology variant0.2009Moderately InformativeInherited
Worm Phenotype (WP)adult body morphology variant0.2013Moderately InformativeInherited
Worm Phenotype (WP)body morphology variant0.208Moderately InformativeInherited
Worm Phenotype (WP)fat content variant0.00000000000001909InformativeDirect
Worm Phenotype (WP)cell stress response variant0.1046InformativeInherited
Worm Phenotype (WP)organism stress response variant0.1516InformativeInherited
Worm Phenotype (WP)fat content increased0.00003859Highly InformativeDirect
Worm Phenotype (WP)paraquat response variant0.00009104Highly InformativeDirect
Worm Phenotype (WP)organism pigmentation variant0.001573Highly InformativeInherited

Document: WP annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details) Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 123 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Lipocalins domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Internal database links ]