SUPERFAMILY 1.75 HMM library and genome assignments server

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Intein (protein splicing domain) family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   Hedgehog/intein (Hint) domain [ 51293]
Superfamily:   Hedgehog/intein (Hint) domain [ 51294] (2)
Family:   Intein (protein splicing domain) [ 51298] (4)


Family statistics
Genomes (71) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 71 357 8
Proteins 71 357 8


Enzyme Commission (EC)

(
show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on acid anhydrides0.00000002192Least InformativeDirect
Enzyme Commission (EC)Nucleotidyltransferases0.0000001317Least InformativeDirect
Enzyme Commission (EC)Isomerases0.002635Least InformativeInherited
Enzyme Commission (EC)Acting on acid anhydrides; involved in cellular an0.002257Moderately InformativeInherited
Enzyme Commission (EC)DNA-directed DNA polymerase0.00000000005581InformativeDirect
Enzyme Commission (EC)Sole sub-subclass for isomerases that do not belon1InformativeInherited
Enzyme Commission (EC)DNA topoisomerase (ATP-hydrolyzing)0.00000000000006696Highly InformativeDirect

Document: EC annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0.01897Least InformativeInherited
Enzyme Commission (EC)Transferases0.4388Least InformativeInherited
Enzyme Commission (EC)Nucleotidyltransferases0.0000001542Moderately InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides0.000003533Moderately InformativeDirect
Enzyme Commission (EC)Isomerases0.002878Moderately InformativeInherited
Enzyme Commission (EC)DNA-directed DNA polymerase0.00000000002217InformativeDirect
Enzyme Commission (EC)Acting on ATP; involved in cellular and subcellular movement0.000000004293InformativeDirect
Enzyme Commission (EC)Translocases0.004825InformativeInherited
Enzyme Commission (EC)Enzymes altering nucleic acid conformation0.000000000002115Highly InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 7 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Hedgehog/intein (Hint) domain domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Enzyme Commission (EC) · Internal database links ]