SUPERFAMILY 1.75 HMM library and genome assignments server

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(Trans)glycosidases superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   TIM beta/alpha-barrel [ 51350] (33)
Superfamily:   (Trans)glycosidases [ 51445] (14)
Families:   Amylase, catalytic domain [ 51446] (25)
  beta-glycanases [ 51487] (26)
  Putative alpha-L-fucosidase, catalytic domain [ 102079]
  Family 1 of glycosyl hydrolase [ 51521] (5)
  Type II chitinase [ 51534] (14)
  1,4-beta-N-acetylmuraminidase [ 63912] (3)
  beta-N-acetylhexosaminidase catalytic domain [ 51550] (5)
  alpha-D-glucuronidase/Hyaluronidase catalytic domain [ 82253] (3)
  NagZ-like [ 51553] (2)
  Bee venom hyaluronidase [ 69387]
  Outer surface protein, N-terminal domain [ 110354]
  YicI catalytic domain-like [ 117372] (2)
  Glycosyl hydrolases family 35 catalytic domain [ 117375]
  TM1410-like [ 141796]


Superfamily statistics
Genomes (2,998) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 95,150 606,944 385
Proteins 92,734 597,563 385


Functional annotation
General category Metabolism
Detailed category Carbohydrate metabolism and transport

Document:
Function annotation of SCOP domain superfamilies

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Glycosidases, i.e. enzymes hydrolyzing O- and S-gl0Moderately InformativeDirect
Enzyme Commission (EC)Glycosyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Beta-galactosidase0.00000000000005295InformativeDirect
Enzyme Commission (EC)1,4-alpha-glucan branching enzyme0Highly InformativeDirect
Enzyme Commission (EC)Beta-glucosidase2.368e-16Highly InformativeDirect
Enzyme Commission (EC)Cyclomaltodextrin glucanotransferase0.000000001012Highly InformativeDirect
Enzyme Commission (EC)Alpha-amylase0.000000009899Highly InformativeDirect
Enzyme Commission (EC)Alpha-glucosidase0.0004384Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)disease of metabolism0.000000159Moderately InformativeDirect
Disease Ontology (DO)lysosomal storage disease0.03279InformativeInherited
Disease Ontology (DO)sphingolipidosis0.0000000001642Highly InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of metabolism/homeostasis0.00004744Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the digestive system0.004893Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the cardiovascular system0.005896Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the genitourinary system0.02006Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the head0.07392Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the eye0.328Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the skeletal system0.3495Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the urinary system0.0007745Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of cardiovascular system morphology0.04498Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the vasculature0.06664Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the abdominal organs0.1069Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal eye morphology0.1562Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the vertebral column0.4587Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of skin morphology0.8868Moderately InformativeInherited
Phenotypic Abnormality (PA)Visceromegaly0.0001508InformativeDirect
Phenotypic Abnormality (PA)Abnormal spleen morphology0.0003011InformativeDirect
Phenotypic Abnormality (PA)Abnormal vertebral morphology0.01365InformativeInherited
Phenotypic Abnormality (PA)Abnormal cornea morphology0.03277InformativeInherited
Phenotypic Abnormality (PA)Abnormality of lipid metabolism0.05816InformativeInherited
Phenotypic Abnormality (PA)Abnormal systemic arterial morphology0.1453InformativeInherited
Phenotypic Abnormality (PA)Vascular skin abnormality0.2245InformativeInherited
Phenotypic Abnormality (PA)Abnormal retinal morphology0.6562InformativeInherited
Phenotypic Abnormality (PA)Urinary glycosaminoglycan excretion0.0000001519Highly InformativeDirect
Phenotypic Abnormality (PA)Dysostosis multiplex0.000007711Highly InformativeDirect
Phenotypic Abnormality (PA)Corneal opacity0.0001621Highly InformativeDirect
Phenotypic Abnormality (PA)Aplasia/Hypoplasia involving the vertebral column0.0002267Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the odontoid process0.0003601Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormal autonomic nervous system physiology0.0007473Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the retinal vasculature0.2752Highly InformativeInherited
Phenotypic Abnormality (PA)Abnormal form of the vertebral bodies0.2931Highly InformativeInherited

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)cellular phenotype0.1655Least InformativeInherited
Mammalian Phenotype (MP)growth/size/body region phenotype0.1879Least InformativeInherited
Mammalian Phenotype (MP)abnormal homeostasis0.1886Least InformativeInherited
Mammalian Phenotype (MP)mortality/aging0.6181Least InformativeInherited
Mammalian Phenotype (MP)liver/biliary system phenotype0.00002773Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal skeleton morphology0.003306Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal renal/urinary system physiology0.1643Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal craniofacial morphology0.1861Moderately InformativeInherited
Mammalian Phenotype (MP)hearing/vestibular/ear phenotype0.2191Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal renal/urinary system morphology0.3461Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal muscle morphology0.3972Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal behavior1Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal renal tubule morphology0.00001159InformativeDirect
Mammalian Phenotype (MP)abnormal urine homeostasis0.0005479InformativeDirect
Mammalian Phenotype (MP)premature death0.0007791InformativeDirect
Mammalian Phenotype (MP)abnormal voluntary movement0.01513InformativeInherited
Mammalian Phenotype (MP)abnormal hearing physiology0.06423InformativeInherited
Mammalian Phenotype (MP)abnormal appendicular skeleton morphology0.06804InformativeInherited
Mammalian Phenotype (MP)abnormal head morphology0.1774InformativeInherited
Mammalian Phenotype (MP)abnormal glucose homeostasis0.2381InformativeInherited
Mammalian Phenotype (MP)abnormal glycosaminoglycan level0.0000002314Highly InformativeDirect
Mammalian Phenotype (MP)abnormal gait0.000000617Highly InformativeDirect
Mammalian Phenotype (MP)kyphosis0.00003403Highly InformativeDirect
Mammalian Phenotype (MP)abnormal liver lobule morphology0.0001799Highly InformativeDirect
Mammalian Phenotype (MP)abnormal lysosome physiology0.0003789Highly InformativeDirect
Mammalian Phenotype (MP)paralysis0.0007043Highly InformativeDirect
Mammalian Phenotype (MP)impaired hearing0.005076Highly InformativeInherited
Mammalian Phenotype (MP)abnormal glycogen homeostasis0.01237Highly InformativeInherited
Mammalian Phenotype (MP)abnormal locomotor activation0.3653Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism environmental stimulus response variant0.8413Least InformativeInherited
Worm Phenotype (WP)organism pathogen response variant0.05416InformativeInherited
Worm Phenotype (WP)pathogen susceptibility increased0.0002673Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details) Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)whole plant0.02612Least InformativeInherited
Plant ANatomical entity (PAN)root system0.5298Least InformativeInherited
Plant ANatomical entity (PAN)seed1Least InformativeInherited
Plant ANatomical entity (PAN)leaf1Least InformativeInherited
Plant ANatomical entity (PAN)fruit0.0000007392InformativeDirect
Plant ANatomical entity (PAN)juvenile vascular leaf0Highly InformativeDirect
Plant ANatomical entity (PAN)adult vascular leaf0Highly InformativeDirect
Plant ANatomical entity (PAN)radicle0.00007291Highly InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Glycosyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Glycosylases0Moderately InformativeDirect
Enzyme Commission (EC)Isomerases1Moderately InformativeInherited
Enzyme Commission (EC)Hexosyltransferases0InformativeDirect
Enzyme Commission (EC)Intramolecular transferases1InformativeInherited
Enzyme Commission (EC)Beta-galactosidase0.0000000000001514Highly InformativeDirect
Enzyme Commission (EC)Transferring other glycosyl groups0.9996Highly InformativeInherited

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 293 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a (Trans)glycosidases domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 293 hidden Markov models representing the (Trans)glycosidases superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]