SUPERFAMILY 1.75 HMM library and genome assignments server

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beta-glycanases family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   TIM beta/alpha-barrel [ 51350] (33)
Superfamily:   (Trans)glycosidases [ 51445] (14)
Family:   beta-glycanases [ 51487] (26)


Family statistics
Genomes (1,538) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 13,045 66,585 94
Proteins 12,918 66,268 94


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Glycosidases, i.e. enzymes hydrolyzing O- and S-gl0Moderately InformativeDirect
Enzyme Commission (EC)Endo-1,4-beta-xylanase0.00000000002127Highly InformativeDirect
Enzyme Commission (EC)Beta-galactosidase0.000000001997Highly InformativeDirect
Enzyme Commission (EC)Cellulase0.000002852Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)disease of metabolism0.00547Moderately InformativeInherited

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of the genitourinary system0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the face0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the eye0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the integument0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the cardiovascular system0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of metabolism/homeostasis0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the immune system0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the musculature0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system morphology0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the digestive system0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of skeletal morphology0.2098Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the ear0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the respiratory system0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormal muscle tone0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the urinary system physiology0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of higher mental function0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormal skeletal muscle morphology0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormal ocular adnexa morphology0Moderately InformativeDirect
Phenotypic Abnormality (PA)Unusual infection0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormal heart morphology0.0188Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the vertebral column0.02239Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the lymphatic system0.02943Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the abdominal organs0.113Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal anterior eye segment morphology0.1724Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal oral cavity morphology1Moderately InformativeInherited
Phenotypic Abnormality (PA)Hearing impairment0InformativeDirect
Phenotypic Abnormality (PA)Abnormal facial shape0InformativeDirect
Phenotypic Abnormality (PA)Recurrent infections0InformativeDirect
Phenotypic Abnormality (PA)Respiratory tract infection0InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the gingiva0.00004021InformativeDirect
Phenotypic Abnormality (PA)Abnormal heart valve morphology0.000147InformativeDirect
Phenotypic Abnormality (PA)Abnormal vertebral morphology0.000561InformativeDirect
Phenotypic Abnormality (PA)Splenomegaly0.0005686InformativeDirect
Phenotypic Abnormality (PA)Abnormal myocardium morphology0.0009944InformativeDirect
Phenotypic Abnormality (PA)Abnormal cornea morphology0.002536InformativeInherited
Phenotypic Abnormality (PA)Corneal opacity0.00007584Highly InformativeDirect
Phenotypic Abnormality (PA)Kyphosis0.0005525Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the cerebral ventricles0.002694Highly InformativeInherited

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)cellular phenotype0Least InformativeDirect
Mammalian Phenotype (MP)hematopoietic system phenotype0Least InformativeDirect
Mammalian Phenotype (MP)nervous system phenotype0.06075Least InformativeInherited
Mammalian Phenotype (MP)immune system phenotype0.0612Least InformativeInherited
Mammalian Phenotype (MP)abnormal homeostasis0.1032Least InformativeInherited
Mammalian Phenotype (MP)abnormal bone structure0.000903Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal professional antigen presenting cell morphology0.00169Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal brain morphology0.008504Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal myeloid cell morphology0.3278Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal behavior1Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal limbic system morphology0.00008375InformativeDirect
Mammalian Phenotype (MP)abnormal macrophage morphology0.0001273InformativeDirect
Mammalian Phenotype (MP)abnormal metencephalon morphology0.0001513InformativeDirect
Mammalian Phenotype (MP)abnormal skeleton development0.0001641InformativeDirect
Mammalian Phenotype (MP)abnormal enzyme/coenzyme level0.0002756InformativeDirect
Mammalian Phenotype (MP)abnormal cerebral hemisphere morphology0.0003744InformativeDirect
Mammalian Phenotype (MP)abnormal voluntary movement0.007567InformativeInherited
Mammalian Phenotype (MP)abnormal basal ganglion morphology0.000001405Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details) Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)root1Least InformativeInherited
Plant ANatomical entity (PAN)seed1Least InformativeInherited
Plant ANatomical entity (PAN)radicle0.0000008858Highly InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Glycosylases0Moderately InformativeDirect
Enzyme Commission (EC)Endo-1,4-beta-xylanase0Highly InformativeDirect
Enzyme Commission (EC)Cellulase0.000001066Highly InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 293 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a (Trans)glycosidases domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]