SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Group II chaperonin (CCT, TRIC), apical domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   The "swivelling" beta/beta/alpha domain [ 52008] (10)
Superfamily:   GroEL apical domain-like [ 52029] (2)
Family:   Group II chaperonin (CCT, TRIC), apical domain [ 52034]


Family statistics
Genomes (656) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 1,031 4,204 8
Proteins 1,031 4,202 8


Enzyme Commission (EC)

(
show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Phosphotransferases with an alcohol group as accep0Moderately InformativeDirect

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)mortality/aging0Least InformativeDirect
Mammalian Phenotype (MP)prenatal lethality0Moderately InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0Least InformativeDirect
Worm Phenotype (WP)larval arrest0Least InformativeDirect
Worm Phenotype (WP)cell morphology variant0Least InformativeDirect
Worm Phenotype (WP)cell development variant0.000008626Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.00005216Least InformativeDirect
Worm Phenotype (WP)blast cell physiology variant0.00005216Least InformativeDirect
Worm Phenotype (WP)organism behavior variant0.00204Least InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.0000000003259Moderately InformativeDirect
Worm Phenotype (WP)cell organization biogenesis variant0.0000000009654Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.00000002159Moderately InformativeDirect
Worm Phenotype (WP)germ cell development variant0.00000002941Moderately InformativeDirect
Worm Phenotype (WP)reproductive system morphology variant0.00000004639Moderately InformativeDirect
Worm Phenotype (WP)level of transgene expression variant0.0000004146Moderately InformativeDirect
Worm Phenotype (WP)protein protein interaction variant0.0000005041Moderately InformativeDirect
Worm Phenotype (WP)pattern of transgene expression variant0.000002992Moderately InformativeDirect
Worm Phenotype (WP)cell death variant0.0002335Moderately InformativeDirect
Worm Phenotype (WP)cell division variant0.001765Moderately InformativeInherited
Worm Phenotype (WP)body region morphology variant0.002613Moderately InformativeInherited
Worm Phenotype (WP)organism segment morphology variant0.002613Moderately InformativeInherited
Worm Phenotype (WP)developmental morphology variant0.002625Moderately InformativeInherited
Worm Phenotype (WP)adult body morphology variant0.002637Moderately InformativeInherited
Worm Phenotype (WP)body morphology variant0.002823Moderately InformativeInherited
Worm Phenotype (WP)organ system development variant0.01242Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.1698Moderately InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0.3263Moderately InformativeInherited
Worm Phenotype (WP)chemical response variant0.3903Moderately InformativeInherited
Worm Phenotype (WP)pachytene progression during oogenesis variant0.000000000009726InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.0000000001231InformativeDirect
Worm Phenotype (WP)transgene expression increased0.000000003088InformativeDirect
Worm Phenotype (WP)oocyte morphology variant0.000000003204InformativeDirect
Worm Phenotype (WP)endocytic transport defect0.0000001485InformativeDirect
Worm Phenotype (WP)vesicle morphology variant0.0000002544InformativeDirect
Worm Phenotype (WP)accumulated germline cell corpses0.000000282InformativeDirect
Worm Phenotype (WP)avoids bacterial lawn0.000001001InformativeDirect
Worm Phenotype (WP)vulva morphology variant0.000003406InformativeDirect
Worm Phenotype (WP)nuclear positioning variant0.000008245InformativeDirect
Worm Phenotype (WP)extended life span0.000009293InformativeDirect
Worm Phenotype (WP)cell stress response variant0.00006441InformativeDirect
Worm Phenotype (WP)protein metabolism variant0.0001604InformativeDirect
Worm Phenotype (WP)oocyte physiology variant0.0002197InformativeDirect
Worm Phenotype (WP)sick0.0003639InformativeDirect
Worm Phenotype (WP)gonad development variant0.001113InformativeInherited
Worm Phenotype (WP)cell component localization variant0.003302InformativeInherited
Worm Phenotype (WP)organism stress response variant0.01254InformativeInherited
Worm Phenotype (WP)mitosis variant0.08761InformativeInherited
Worm Phenotype (WP)rachis morphology variant0.0938InformativeInherited
Worm Phenotype (WP)organism pathogen response variant0.1508InformativeInherited
Worm Phenotype (WP)meiotic chromosome organization variant0.5376InformativeInherited
Worm Phenotype (WP)oocytes small0.00000000000001369Highly InformativeDirect
Worm Phenotype (WP)pleiotropic defects severe early emb0.000000000004297Highly InformativeDirect
Worm Phenotype (WP)germline nuclear positioning variant0.0000000003483Highly InformativeDirect
Worm Phenotype (WP)rachis narrow0.0000000007875Highly InformativeDirect
Worm Phenotype (WP)RAB-11 recycling endosome localization variant0.00000001793Highly InformativeDirect
Worm Phenotype (WP)unfolded protein response variant0.00000004071Highly InformativeDirect
Worm Phenotype (WP)germ cell compartment anucleate0.00000008188Highly InformativeDirect
Worm Phenotype (WP)organism pigmentation variant0.0000005145Highly InformativeDirect
Worm Phenotype (WP)male somatic gonad development variant0.0000272Highly InformativeDirect
Worm Phenotype (WP)gonad arm morphology variant0.00004888Highly InformativeDirect
Worm Phenotype (WP)chromosome condensation variant0.00006033Highly InformativeDirect
Worm Phenotype (WP)no induction of antimicrobial peptide expression after infection0.0001211Highly InformativeDirect
Worm Phenotype (WP)no oocytes0.0001944Highly InformativeDirect
Worm Phenotype (WP)cell membrane organization biogenesis variant0.0002688Highly InformativeDirect
Worm Phenotype (WP)organism heat response variant0.0003167Highly InformativeDirect
Worm Phenotype (WP)diakinesis progression during oogenesis variant0.1619Highly InformativeInherited

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)chromosome/plasmid maintenance0.0006238InformativeDirect

Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)adult0.05269Least InformativeInherited
Fly Anatomy (FA)multi-tissue structure0.1823Least InformativeInherited
Fly Anatomy (FA)adult heart0.000000000169InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)cell0.2754Least InformativeInherited
Zebrafish Anatomy (ZA)electrically active cell0.009765Moderately InformativeInherited
Zebrafish Anatomy (ZA)portion of tissue0.04895Moderately InformativeInherited
Zebrafish Anatomy (ZA)skeletal muscle0.000002347InformativeDirect
Zebrafish Anatomy (ZA)muscle cell0.00002376InformativeDirect
Zebrafish Anatomy (ZA)myotome0.0000002376Highly InformativeDirect
Zebrafish Anatomy (ZA)solid compound organ0.0009231Highly InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)embryo0.05256Least InformativeInherited
Xenopus ANatomical entity (XAN)tissue0.2042Least InformativeInherited
Xenopus ANatomical entity (XAN)brain0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)musculoskeletal system0.001882Moderately InformativeInherited
Xenopus ANatomical entity (XAN)embryonic structure0.01036Moderately InformativeInherited
Xenopus ANatomical entity (XAN)muscle0.00001263InformativeDirect
Xenopus ANatomical entity (XAN)endocrine system0.00007182InformativeDirect
Xenopus ANatomical entity (XAN)tail0.0002304InformativeDirect
Xenopus ANatomical entity (XAN)mesoderm0.06126InformativeInherited
Xenopus ANatomical entity (XAN)thymus0.00004308Highly InformativeDirect
Xenopus ANatomical entity (XAN)anterior dorsal lateral plate region0.00008596Highly InformativeDirect
Xenopus DEvelopment stage (XDE)post-embryonic stage0.1442Least InformativeInherited
Xenopus DEvelopment stage (XDE)NF stage 660.0009997InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)shoot apex0Least InformativeDirect
Plant ANatomical entity (PAN)shoot internode0Least InformativeDirect
Plant ANatomical entity (PAN)root0Least InformativeDirect
Plant ANatomical entity (PAN)plant embryo0Least InformativeDirect
Plant ANatomical entity (PAN)seed0Least InformativeDirect
Plant ANatomical entity (PAN)portion of meristem tissue0Least InformativeDirect
Plant ANatomical entity (PAN)vascular leaf0Least InformativeDirect
Plant ANatomical entity (PAN)megasporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)sepal0Least InformativeDirect
Plant ANatomical entity (PAN)petal0Least InformativeDirect
Plant ANatomical entity (PAN)stem0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect
Plant ANatomical entity (PAN)androecium0Least InformativeDirect
Plant ANatomical entity (PAN)gynoecium0Least InformativeDirect
Plant ANatomical entity (PAN)leaf lamina0Least InformativeDirect
Plant ANatomical entity (PAN)collective leaf structure0Least InformativeDirect
Plant ANatomical entity (PAN)branch0Least InformativeDirect
Plant ANatomical entity (PAN)sporangium0Least InformativeDirect
Plant ANatomical entity (PAN)phyllome apex0Least InformativeDirect
Plant ANatomical entity (PAN)microgametophyte0Least InformativeDirect
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)seed development stage0.0001592InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferases0Least InformativeDirect
Enzyme Commission (EC)Phosphotransferases with an alcohol group as acceptor0Moderately InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 11 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a GroEL apical domain-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]