SUPERFAMILY 1.75 HMM library and genome assignments server

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Translational machinery components superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Ribonuclease H-like motif [ 53066] (7)
Superfamily:   Translational machinery components [ 53137] (2)
Families:   Ribosomal protein L18 and S11 [ 53138] (2)
  ERF1/Dom34 middle domain-like [ 53143] (3)


Superfamily statistics
Genomes (3,247) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 10,604 65,177 25
Proteins 10,580 65,104 25


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)developmental timing variant0Least InformativeDirect
Worm Phenotype (WP)blast cell physiology variant0.01233Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.01235Least InformativeInherited
Worm Phenotype (WP)organ system morphology variant0.03153Least InformativeInherited
Worm Phenotype (WP)cell morphology variant0.03389Least InformativeInherited
Worm Phenotype (WP)cell development variant0.04526Least InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.0007467Moderately InformativeDirect
Worm Phenotype (WP)germ cell morphology variant0.001769Moderately InformativeInherited
Worm Phenotype (WP)early embryonic lethal0.003968Moderately InformativeInherited
Worm Phenotype (WP)germ cell development variant0.00519Moderately InformativeInherited
Worm Phenotype (WP)reproductive system morphology variant0.005367Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.05571Moderately InformativeInherited
Worm Phenotype (WP)pachytene progression during oogenesis variant0.00001209InformativeDirect
Worm Phenotype (WP)diplotene progression during oogenesis variant0.00001274InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.00004667InformativeDirect
Worm Phenotype (WP)rachis morphology variant0.00005081InformativeDirect
Worm Phenotype (WP)oocyte morphology variant0.0002272InformativeDirect
Worm Phenotype (WP)pachytene region organization variant0.000007448Highly InformativeDirect
Worm Phenotype (WP)oocyte number decreased0.00001386Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)nervous system0Least InformativeDirect
Zebrafish Anatomy (ZA)organism subdivision0Least InformativeDirect
Zebrafish Anatomy (ZA)cavitated compound organ0Least InformativeDirect
Zebrafish Anatomy (ZA)cell0Least InformativeDirect
Zebrafish Anatomy (ZA)head0Moderately InformativeDirect
Zebrafish Anatomy (ZA)anatomical cluster0Moderately InformativeDirect
Zebrafish Anatomy (ZA)pericardial region0InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)trunk0.4351Least InformativeInherited
Xenopus ANatomical entity (XAN)anatomical system1Least InformativeInherited
Xenopus ANatomical entity (XAN)germ cell0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)viscus0.07416Moderately InformativeInherited
Xenopus ANatomical entity (XAN)alimentary system0.1129Moderately InformativeInherited
Xenopus ANatomical entity (XAN)pancreas0.0008114Highly InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 12 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Translational machinery components domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 12 hidden Markov models representing the Translational machinery components superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]