SUPERFAMILY 1.75 HMM library and genome assignments server

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L-arabinose binding protein-like family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Periplasmic binding protein-like I [ 53821]
Superfamily:   Periplasmic binding protein-like I [ 53822]
Family:   L-arabinose binding protein-like [ 53823] (16)


Family statistics
Genomes (2,078) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 19,101 146,758 47
Proteins 19,049 146,595 47


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Least InformativeDirect
Enzyme Commission (EC)Guanylate cyclase0Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)nervous system disease0.00007305Least InformativeDirect
Disease Ontology (DO)disease of mental health0.00000000767Moderately InformativeDirect
Disease Ontology (DO)neurodegenerative disease0.7314Moderately InformativeInherited
Disease Ontology (DO)schizophrenia0.000000009329InformativeDirect
Disease Ontology (DO)epilepsy0.0000002468InformativeDirect
Disease Ontology (DO)developmental disorder of mental health0.4588InformativeInherited
Disease Ontology (DO)amyotrophic lateral sclerosis0.000000969Highly InformativeDirect
Disease Ontology (DO)bipolar disorder0.00016Highly InformativeDirect
Disease Ontology (DO)autistic disorder0.0004377Highly InformativeDirect
Disease Ontology (DO)focal epilepsy0.007013Highly InformativeInherited

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0.2991Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of central motor function0.01463Moderately InformativeInherited
Phenotypic Abnormality (PA)Neurodevelopmental delay0.02343Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of higher mental function0.0394Moderately InformativeInherited
Phenotypic Abnormality (PA)Encephalopathy0.003833InformativeInherited
Phenotypic Abnormality (PA)Abnormal nervous system electrophysiology0.01092InformativeInherited
Phenotypic Abnormality (PA)Neurological speech impairment0.01721InformativeInherited
Phenotypic Abnormality (PA)Epileptic encephalopathy0.00008068Highly InformativeDirect
Phenotypic Abnormality (PA)Delayed speech and language development0.01064Highly InformativeInherited

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)nervous system phenotype0.0000006918Least InformativeDirect
Mammalian Phenotype (MP)abnormal synaptic transmission0.0001357Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal behavior1Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal learning/memory/conditioning0.000002091InformativeDirect
Mammalian Phenotype (MP)abnormal nervous system electrophysiology0.00006906InformativeDirect
Mammalian Phenotype (MP)abnormal behavioral response to xenobiotic0.0001539InformativeDirect
Mammalian Phenotype (MP)abnormal sensory capabilities/reflexes/nociception0.0001864InformativeDirect
Mammalian Phenotype (MP)abnormal emotion/affect behavior0.0009123InformativeDirect
Mammalian Phenotype (MP)abnormal voluntary movement0.1402InformativeInherited
Mammalian Phenotype (MP)abnormal CNS synaptic transmission0.1749InformativeInherited
Mammalian Phenotype (MP)abnormal long term depression0.0000005407Highly InformativeDirect
Mammalian Phenotype (MP)decreased fear-related response0.00005299Highly InformativeDirect
Mammalian Phenotype (MP)abnormal glutamate-mediated receptor currents0.0002541Highly InformativeDirect
Mammalian Phenotype (MP)taste/olfaction phenotype0.004789Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism behavior variant0.00000985Least InformativeDirect
Worm Phenotype (WP)movement variant0.0001784Moderately InformativeDirect
Worm Phenotype (WP)locomotion variant0.001497Moderately InformativeInherited
Worm Phenotype (WP)chemical response variant0.004135Moderately InformativeInherited
Worm Phenotype (WP)chemotaxis variant0.0000000005526InformativeDirect
Worm Phenotype (WP)thermotaxis variant0.00002679Highly InformativeDirect
Worm Phenotype (WP)social behavior variant0.0001494Highly InformativeDirect
Worm Phenotype (WP)aqueous positive chemotaxis variant0.003041Highly InformativeInherited
Worm Phenotype (WP)pharyngeal pumping irregular0.2264Highly InformativeInherited
Worm Phenotype (WP)pharyngeal pumping rate variant0.3783Highly InformativeInherited
Worm Phenotype (WP)positive chemotaxis defective0.4703Highly InformativeInherited

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)neurophysiology defective0.0004159InformativeDirect

Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)larva0Least InformativeDirect
Fly Anatomy (FA)nervous system0Least InformativeDirect
Fly Anatomy (FA)organ system subdivision0Least InformativeDirect
Fly Anatomy (FA)peripheral nervous system0Moderately InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details) Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus DEvelopment stage (XDE)embryonic stage0.01112Moderately InformativeInherited
Xenopus DEvelopment stage (XDE)tailbud stage0.5055InformativeInherited
Xenopus DEvelopment stage (XDE)NF stage 35 and 360.00008481Highly InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Moderately InformativeDirect
Enzyme Commission (EC)Phosphorus-oxygen lyases1Highly InformativeInherited

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 120 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Periplasmic binding protein-like I domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]