SUPERFAMILY 1.75 HMM library and genome assignments server

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Translational machinery components family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ribosomal protein S5 domain 2-like [ 54210]
Superfamily:   Ribosomal protein S5 domain 2-like [ 54211] (12)
Family:   Translational machinery components [ 54212] (4)


Family statistics
Genomes (3,207) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 8,643 58,349 25
Proteins 8,641 58,345 25


Human Phenotype (HP)

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show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system morphology0Least InformativeDirect

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)larval arrest0Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.0001661Least InformativeDirect
Worm Phenotype (WP)blast cell physiology variant0.0001661Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.004173Least InformativeInherited
Worm Phenotype (WP)cell morphology variant0.03561Least InformativeInherited
Worm Phenotype (WP)cell development variant0.04539Least InformativeInherited
Worm Phenotype (WP)pattern of transgene expression variant0.00001324Moderately InformativeDirect
Worm Phenotype (WP)germ cell differentiation variant0.0003161Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.002651Moderately InformativeInherited
Worm Phenotype (WP)germ cell development variant0.003091Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.01168Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.0392Moderately InformativeInherited
Worm Phenotype (WP)reproductive system morphology variant0.09016Moderately InformativeInherited
Worm Phenotype (WP)cell death variant0.2218Moderately InformativeInherited
Worm Phenotype (WP)pachytene progression during oogenesis variant0.000002362InformativeDirect
Worm Phenotype (WP)diplotene progression during oogenesis variant0.000002362InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.00001102InformativeDirect
Worm Phenotype (WP)rachis morphology variant0.00001184InformativeDirect
Worm Phenotype (WP)nuclear appearance variant0.00004361InformativeDirect
Worm Phenotype (WP)oocyte morphology variant0.00007831InformativeDirect
Worm Phenotype (WP)oocytes small0.00000004165Highly InformativeDirect
Worm Phenotype (WP)apoptosis reduced0.00008749Highly InformativeDirect
Worm Phenotype (WP)early larval arrest0.00034Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect

Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)increased mortality0Least InformativeDirect

Document: FP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)tissue0.2042Least InformativeInherited
Xenopus ANatomical entity (XAN)anatomical cluster0.6285Least InformativeInherited
Xenopus ANatomical entity (XAN)testis0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)musculoskeletal system0.02131Moderately InformativeInherited
Xenopus ANatomical entity (XAN)alimentary system0.4706Moderately InformativeInherited
Xenopus ANatomical entity (XAN)viscus0.6621Moderately InformativeInherited
Xenopus ANatomical entity (XAN)muscle0.0006063InformativeDirect
Xenopus ANatomical entity (XAN)pancreas0.0002317Highly InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 86 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein S5 domain 2-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]