SUPERFAMILY 1.75 HMM library and genome assignments server

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UBC-related family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   UBC-like [ 54494]
Superfamily:   UBC-like [ 54495] (4)
Family:   UBC-related [ 54496] (6)


Family statistics
Genomes (507) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 12,517 32,367 59
Proteins 12,489 32,306 59


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Least InformativeDirect
Enzyme Commission (EC)Forming carbon-nitrogen bonds0Moderately InformativeDirect
Enzyme Commission (EC)Acid--D-amino-acid ligases (peptide synthases)0InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)genetic disease0.05475Moderately InformativeInherited
Disease Ontology (DO)hereditary breast ovarian cancer syndrome0.0009129InformativeDirect

Document: DO annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell development variant0.0000002648Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.0000008509Least InformativeDirect
Worm Phenotype (WP)organism behavior variant0.00000731Least InformativeDirect
Worm Phenotype (WP)larval arrest0.4642Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.7269Least InformativeInherited
Worm Phenotype (WP)blast cell physiology variant0.7269Least InformativeInherited
Worm Phenotype (WP)protein protein interaction variant0Moderately InformativeDirect
Worm Phenotype (WP)pattern of transgene expression variant0.0000000000006295Moderately InformativeDirect
Worm Phenotype (WP)locomotion variant0.00000001634Moderately InformativeDirect
Worm Phenotype (WP)movement variant0.0000003265Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.568Moderately InformativeInherited
Worm Phenotype (WP)neuron migration variant0InformativeDirect
Worm Phenotype (WP)cell cycle arrest0.00006191Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect

Document: YP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details) Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)tissue0.0004634Least InformativeDirect
Xenopus ANatomical entity (XAN)nervous system0.0009222Least InformativeDirect
Xenopus ANatomical entity (XAN)germ cell0.000008333Moderately InformativeDirect
Xenopus ANatomical entity (XAN)anatomical entity in vitro0.00001855InformativeDirect
Xenopus DEvelopment stage (XDE)post-embryonic stage0.00006579Least InformativeDirect
Xenopus DEvelopment stage (XDE)NF stage 660.00004282InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)sporangium0.0006866Least InformativeDirect
Plant ANatomical entity (PAN)microgametophyte0.02332Least InformativeInherited
Plant ANatomical entity (PAN)microsporophyll0.07478Least InformativeInherited
Plant ANatomical entity (PAN)pollen tube cell0.00009101InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferases0Least InformativeDirect
Enzyme Commission (EC)Acyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Aminoacyltransferases0InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Disease Ontology (DO) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 66 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a UBC-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Disease Ontology (DO) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]