SUPERFAMILY 1.75 HMM library and genome assignments server

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Pili subunits superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Pili subunits [ 54522]
Superfamily:   Pili subunits [ 54523] (7)
Families:   Pilin [ 54524] (4)
  TcpA-like pilin [ 89868]
  Pseudopilin [ 117865]
  YadA C-terminal domain-like [ 143107]
  EpsJ-like [ 160127] (2)
  GspK pilin-like domain [ 160132]
  GSPII I/J protein-like [ 160135] (2)


Superfamily statistics
Genomes (1,771) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 10,633 107,270 15
Proteins 10,530 106,207 15


Functional annotation
General category Processes_EC
Detailed category Cell adhesion

Document:
Function annotation of SCOP domain superfamilies

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Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 17 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Pili subunits domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 17 hidden Markov models representing the Pili subunits superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Internal database links ]