SUPERFAMILY 1.75 HMM library and genome assignments server

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L30e/L7ae ribosomal proteins family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Bacillus chorismate mutase-like [ 55297] (9)
Superfamily:   L30e-like [ 55315] (3)
Family:   L30e/L7ae ribosomal proteins [ 55316] (4)


Family statistics
Genomes (659) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 1,392 4,116 23
Proteins 1,392 4,113 23


Disease Ontology (DO)

(
show details) Document: DO annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0Least InformativeDirect
Worm Phenotype (WP)cell development variant0Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0Least InformativeDirect
Worm Phenotype (WP)blast cell physiology variant0Least InformativeDirect
Worm Phenotype (WP)cell morphology variant0.02188Least InformativeInherited
Worm Phenotype (WP)organism behavior variant0.07557Least InformativeInherited
Worm Phenotype (WP)pattern of transgene expression variant0Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.00007517Moderately InformativeDirect
Worm Phenotype (WP)germ cell development variant0.00008899Moderately InformativeDirect
Worm Phenotype (WP)reproductive system morphology variant0.003249Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.008279Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.02189Moderately InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.1903Moderately InformativeInherited
Worm Phenotype (WP)pachytene progression during oogenesis variant0.000007682InformativeDirect
Worm Phenotype (WP)diplotene progression during oogenesis variant0.000007682InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.00002663InformativeDirect
Worm Phenotype (WP)rachis morphology variant0.0000282InformativeDirect
Worm Phenotype (WP)avoids bacterial lawn0.00003477InformativeDirect
Worm Phenotype (WP)oocyte morphology variant0.0001304InformativeDirect
Worm Phenotype (WP)extended life span0.0001542InformativeDirect
Worm Phenotype (WP)sick0.0002521InformativeDirect
Worm Phenotype (WP)diplotene region organization variant0.000001375Highly InformativeDirect
Worm Phenotype (WP)gonad vesiculated0.000002147Highly InformativeDirect
Worm Phenotype (WP)rachis narrow0.000005731Highly InformativeDirect
Worm Phenotype (WP)oocyte number decreased0.00000753Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)shoot apex0Least InformativeDirect
Plant ANatomical entity (PAN)shoot internode0Least InformativeDirect
Plant ANatomical entity (PAN)root0Least InformativeDirect
Plant ANatomical entity (PAN)seed0Least InformativeDirect
Plant ANatomical entity (PAN)stem0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Acting on ester bonds0Moderately InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 20 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a L30e-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]