SUPERFAMILY 1.75 HMM library and genome assignments server

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Ribonuclease Rh-like family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ribonuclease Rh-like [ 55894]
Superfamily:   Ribonuclease Rh-like [ 55895]
Family:   Ribonuclease Rh-like [ 55896] (8)


Family statistics
Genomes (368) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 931 3,708 12
Proteins 922 3,698 12


Enzyme Commission (EC)

(
show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on ester bonds0Least InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides1Least InformativeInherited
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0.8136Least InformativeInherited
Enzyme Commission (EC)Nucleotidyltransferases0.03694Least InformativeInherited
Enzyme Commission (EC)Serine endopeptidases0.00001323Moderately InformativeDirect
Enzyme Commission (EC)In phosphorous-containing anhydrides0.00002614Moderately InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides; involved in cellular an0.0003121Moderately InformativeDirect
Enzyme Commission (EC)Nucleoside-triphosphatase0.000000000148InformativeDirect
Enzyme Commission (EC)RNA-directed RNA polymerase0.000000001922InformativeDirect
Enzyme Commission (EC)RNA helicase0.000001999InformativeDirect
Enzyme Commission (EC)Endoribonucleases producing other than 5'-phosphom0Highly InformativeDirect

Document: EC annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0.8871Least InformativeInherited
Enzyme Commission (EC)Transferases1Least InformativeInherited
Enzyme Commission (EC)Lyases0Moderately InformativeDirect
Enzyme Commission (EC)Acting on peptide bonds (peptidases)0.005251Moderately InformativeInherited
Enzyme Commission (EC)Acting on acid anhydrides0.007685Moderately InformativeInherited
Enzyme Commission (EC)Nucleotidyltransferases0.03621Moderately InformativeInherited
Enzyme Commission (EC)Serine endopeptidases0.00001342InformativeDirect
Enzyme Commission (EC)In phosphorus-containing anhydrides0.00005978InformativeDirect
Enzyme Commission (EC)Acting on ATP; involved in cellular and subcellular movement0.0003267InformativeDirect
Enzyme Commission (EC)Nucleoside-triphosphate phosphatase0.0000000001553Highly InformativeDirect
Enzyme Commission (EC)RNA-directed RNA polymerase0.00000000233Highly InformativeDirect
Enzyme Commission (EC)Phosphorus-oxygen lyases1Highly InformativeInherited

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 10 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Ribonuclease Rh-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]