SUPERFAMILY 1.75 HMM library and genome assignments server

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Bet v1-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   TBP-like [ 55944] (11)
Superfamily:   Bet v1-like [ 55961] (10)
Families:   Pathogenesis-related protein 10 (PR10)-like [ 55962] (4)
  STAR domain [ 55966] (4)
  Phoshatidylinositol transfer protein, PITP [ 64388]
  Ring hydroxylating alpha subunit catalytic domain [ 55969] (6)
  AHSA1 domain [ 111168] (11)
  oligoketide cyclase/dehydrase-like [ 118101] (3)
  PA1206-like [ 143839]
  Atu1531-like [ 160742] (2)
  Smu440-like [ 160747]
  CoxG-like [ 160750] (2)


Superfamily statistics
Genomes (2,471) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 28,489 191,413 51
Proteins 27,007 186,864 51


Functional annotation
General category General
Detailed category General

Document:
Function annotation of SCOP domain superfamilies

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0Least InformativeDirect
Enzyme Commission (EC)Acting on paired donors, with incorporation or red0Moderately InformativeDirect
Enzyme Commission (EC)With a reduced iron-sulfur protein as one donor, a0.0006859Highly InformativeDirect

Document: EC annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)abnormal homeostasis0.4219Least InformativeInherited
Mammalian Phenotype (MP)abnormal lipid homeostasis0.0001097Moderately InformativeDirect
Mammalian Phenotype (MP)liver/biliary system phenotype0.01795Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cholesterol level0.0003447InformativeDirect
Mammalian Phenotype (MP)abnormal gallbladder physiology0.00002171Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organ system morphology variant0.01297Least InformativeInherited
Worm Phenotype (WP)nervous system morphology variant0.03877Moderately InformativeInherited
Worm Phenotype (WP)sensillum morphology variant0.2339InformativeInherited
Worm Phenotype (WP)growth rate variant0.0004562Highly InformativeDirect
Worm Phenotype (WP)amphid phasmid morphology variant0.0009533Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details) Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)cardinal part of multi-tissue plant structure0.3101Least InformativeInherited
Plant ANatomical entity (PAN)sporangium0.3387Least InformativeInherited
Plant ANatomical entity (PAN)shoot axis0.3511Least InformativeInherited
Plant ANatomical entity (PAN)root system0.4204Least InformativeInherited
Plant ANatomical entity (PAN)portion of meristem tissue0.5614Least InformativeInherited
Plant ANatomical entity (PAN)leaf0.8007Least InformativeInherited
Plant ANatomical entity (PAN)seed1Least InformativeInherited
Plant ANatomical entity (PAN)root tip0.00002424InformativeDirect
Plant ANatomical entity (PAN)primordium0.0001516InformativeDirect
Plant ANatomical entity (PAN)shoot apical meristem0.000000003202Highly InformativeDirect
Plant ANatomical entity (PAN)reproductive shoot apex0.0000004789Highly InformativeDirect
Plant ANatomical entity (PAN)plant ovule0.000008249Highly InformativeDirect
Plant ANatomical entity (PAN)primary root0.00002003Highly InformativeDirect
Plant ANatomical entity (PAN)trichome0.000187Highly InformativeDirect
Plant ANatomical entity (PAN)vegetative shoot apex0.0005851Highly InformativeDirect
Plant ANatomical entity (PAN)phyllome primordium0.0006793Highly InformativeDirect
Plant structure DEvelopment stage (PDE)seedling development stage0.0001916InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0Least InformativeDirect
Enzyme Commission (EC)Lyases0.9913Least InformativeInherited
Enzyme Commission (EC)Hydrolases1Least InformativeInherited
Enzyme Commission (EC)Carbon-oxygen lyases0.3028Moderately InformativeInherited
Enzyme Commission (EC)Acting on paired donors, with incorporation or reduction of molecular oxygen. The oxygen incorporate0InformativeDirect
Enzyme Commission (EC)Thiolester hydrolases0.00000002844InformativeDirect
Enzyme Commission (EC)With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor0Highly InformativeDirect
Enzyme Commission (EC)With reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen0.0000001123Highly InformativeDirect
Enzyme Commission (EC)With NADH or NADPH as one donor, and incorporation of one atom of oxygen0.1545Highly InformativeInherited

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 69 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Bet v1-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 69 hidden Markov models representing the Bet v1-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]