SUPERFAMILY 1.75 HMM library and genome assignments server

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Lipovitellin-phosvitin complex; beta-sheet shell regions family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Membrane and cell surface proteins and peptides [ 56835] (58)
Fold:   Lipovitellin-phosvitin complex; beta-sheet shell regions [ 56967]
Superfamily:   Lipovitellin-phosvitin complex; beta-sheet shell regions [ 56968]
Family:   Lipovitellin-phosvitin complex; beta-sheet shell regions [ 56969]


Family statistics
Genomes (25) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 215 895 3
Proteins 102 446 2


Worm Phenotype (WP)

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show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)blast cell physiology variant0Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.01792Least InformativeInherited
Worm Phenotype (WP)organism behavior variant0.1557Least InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0.01276Moderately InformativeInherited
Worm Phenotype (WP)chemical response variant0.2156Moderately InformativeInherited
Worm Phenotype (WP)organism pathogen response variant0InformativeDirect
Worm Phenotype (WP)cell stress response variant0.00000003252InformativeDirect
Worm Phenotype (WP)avoids bacterial lawn0.00009811InformativeDirect
Worm Phenotype (WP)endocytic transport defect0.002208InformativeInherited
Worm Phenotype (WP)protein metabolism variant0.02746InformativeInherited
Worm Phenotype (WP)pathogen susceptibility increased0Highly InformativeDirect
Worm Phenotype (WP)unfolded protein response variant0.000001618Highly InformativeDirect

Document: WP annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)organism subdivision0Least InformativeDirect
Zebrafish Anatomy (ZA)multi-tissue structure0Least InformativeDirect
Zebrafish Anatomy (ZA)cavitated compound organ0Least InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)anatomical cluster0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)alimentary system0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)testis0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)viscus0Moderately InformativeDirect

Document: XA annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Lipovitellin-phosvitin complex; beta-sheet shell regions domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Internal database links ]