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Cysteine-rich domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   Cysteine-rich domain [ 57888]
Superfamily:   Cysteine-rich domain [ 57889] (3)
Families:   Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) [ 57890] (6)
  TFIIH p44 subunit cysteine-rich domain [ 57899]
  C1-like domain [ 111463]


Superfamily statistics
Genomes (505) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 15,776 44,568 8
Proteins 10,430 31,039 8


Functional annotation
General category Other
Detailed category Unknown function

Document:
Function annotation of SCOP domain superfamilies

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases1Least InformativeInherited
Enzyme Commission (EC)Protein-serine/threonine kinases0Moderately InformativeDirect
Enzyme Commission (EC)Acting on a sulfur group of donors0.0007862Moderately InformativeDirect
Enzyme Commission (EC)Phosphotransferases with an alcohol group as accep0.7416Moderately InformativeInherited
Enzyme Commission (EC)With NAD(+) or NADP(+) as acceptor0.000007101InformativeDirect
Enzyme Commission (EC)Diacylglycerol kinase0Highly InformativeDirect
Enzyme Commission (EC)Protein kinase C0Highly InformativeDirect
Enzyme Commission (EC)Protein-disulfide reductase0.00000000004229Highly InformativeDirect

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of the genitourinary system0.5274Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the upper urinary tract0.1002Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of immune system physiology0.3536Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the urinary system physiology0.7595Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal renal morphology0.0286InformativeInherited
Phenotypic Abnormality (PA)Abnormal renal physiology0.5204InformativeInherited
Phenotypic Abnormality (PA)Glomerulonephritis0.0001026Highly InformativeDirect

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)immune system phenotype0.0007843Least InformativeDirect
Mammalian Phenotype (MP)hematopoietic system phenotype0.0092Least InformativeInherited
Mammalian Phenotype (MP)nervous system phenotype0.1668Least InformativeInherited
Mammalian Phenotype (MP)abnormal leukocyte physiology0.0004123Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal blood cell morphology/development0.06297Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal nervous system physiology0.06632Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal immune system organ morphology0.2089Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal mononuclear cell morphology0.2278Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal blood cell morphology0.2995Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal hematopoietic cell number0.519Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal gland morphology0.5215Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal thymus morphology0.02827InformativeInherited
Mammalian Phenotype (MP)abnormal T cell differentiation0.1566InformativeInherited
Mammalian Phenotype (MP)abnormal CNS synaptic transmission0.7518InformativeInherited
Mammalian Phenotype (MP)decreased T cell number0.8572InformativeInherited
Mammalian Phenotype (MP)reduced long term potentiation0.0002428Highly InformativeDirect
Mammalian Phenotype (MP)decreased thymocyte number0.0004028Highly InformativeDirect
Mammalian Phenotype (MP)abnormal T cell selection0.02778Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0.00006612Least InformativeDirect
Worm Phenotype (WP)cell morphology variant0.001884Least InformativeInherited
Worm Phenotype (WP)organism behavior variant0.003286Least InformativeInherited
Worm Phenotype (WP)organ system morphology variant0.004792Least InformativeInherited
Worm Phenotype (WP)organism environmental stimulus response variant0.005936Least InformativeInherited
Worm Phenotype (WP)cell development variant0.01277Least InformativeInherited
Worm Phenotype (WP)blast cell physiology variant0.1079Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.1081Least InformativeInherited
Worm Phenotype (WP)protein expression variant0.005738Moderately InformativeInherited
Worm Phenotype (WP)locomotion variant0.008535Moderately InformativeInherited
Worm Phenotype (WP)movement variant0.01861Moderately InformativeInherited
Worm Phenotype (WP)neuron development variant0.04424Moderately InformativeInherited
Worm Phenotype (WP)body region morphology variant0.06681Moderately InformativeInherited
Worm Phenotype (WP)organism segment morphology variant0.06681Moderately InformativeInherited
Worm Phenotype (WP)developmental morphology variant0.06706Moderately InformativeInherited
Worm Phenotype (WP)adult body morphology variant0.06732Moderately InformativeInherited
Worm Phenotype (WP)body morphology variant0.0737Moderately InformativeInherited
Worm Phenotype (WP)germ cell development variant0.1321Moderately InformativeInherited
Worm Phenotype (WP)nervous system morphology variant0.1841Moderately InformativeInherited
Worm Phenotype (WP)feeding behavior variant0.1903Moderately InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0.3373Moderately InformativeInherited
Worm Phenotype (WP)drug response variant0.3661Moderately InformativeInherited
Worm Phenotype (WP)reproductive system morphology variant0.7631Moderately InformativeInherited
Worm Phenotype (WP)germ cell morphology variant0.9132Moderately InformativeInherited
Worm Phenotype (WP)aldicarb response variant0.000006063InformativeDirect
Worm Phenotype (WP)axon outgrowth variant0.000218InformativeDirect
Worm Phenotype (WP)organism pathogen response variant0.0003113InformativeDirect
Worm Phenotype (WP)positive chemotaxis variant0.0003349InformativeDirect
Worm Phenotype (WP)body wall muscle sarcomere morphology variant0.0004243InformativeDirect
Worm Phenotype (WP)muscle cell physiology variant0.002306InformativeInherited
Worm Phenotype (WP)tail morphology variant0.005431InformativeInherited
Worm Phenotype (WP)mitochondria morphology variant0.01362InformativeInherited
Worm Phenotype (WP)neuron morphology variant0.03807InformativeInherited
Worm Phenotype (WP)cell component localization variant0.04076InformativeInherited
Worm Phenotype (WP)pattern protein expression variant0.1364InformativeInherited
Worm Phenotype (WP)cell stress response variant0.2352InformativeInherited
Worm Phenotype (WP)rachis morphology variant0.3643InformativeInherited
Worm Phenotype (WP)drug induced gene expression variant0.000000002419Highly InformativeDirect
Worm Phenotype (WP)response to injury variant0.0000004293Highly InformativeDirect
Worm Phenotype (WP)odorant positive chemotaxis variant0.00002844Highly InformativeDirect
Worm Phenotype (WP)thermotaxis variant0.00004375Highly InformativeDirect
Worm Phenotype (WP)muscle cell attachment variant0.0001907Highly InformativeDirect
Worm Phenotype (WP)germline proliferation variant0.07489Highly InformativeInherited
Worm Phenotype (WP)pathogen resistance increased0.1549Highly InformativeInherited

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)larva0.2328Least InformativeInherited
Fly Anatomy (FA)embryonic/larval integumentary system0.0002935InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details) Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)root system0.1931Least InformativeInherited
Plant ANatomical entity (PAN)root epidermis0.000007818InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorus-containing groups0Least InformativeDirect
Enzyme Commission (EC)Oxidoreductases1Least InformativeInherited
Enzyme Commission (EC)Protein-serine/threonine kinases0Moderately InformativeDirect
Enzyme Commission (EC)Phosphotransferases with an alcohol group as acceptor0.8614Moderately InformativeInherited
Enzyme Commission (EC)Acting on a sulfur group of donors0.001041InformativeInherited
Enzyme Commission (EC)Protein-tyrosine kinases0.4477InformativeInherited
Enzyme Commission (EC)Diacylglycerol kinase (ATP)0Highly InformativeDirect
Enzyme Commission (EC)With NAD(+) or NADP(+) as acceptor0.000008431Highly InformativeDirect
Enzyme Commission (EC)Non-specific protein-tyrosine kinase0.00008714Highly InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 13 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Cysteine-rich domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 13 hidden Markov models representing the Cysteine-rich domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]