SUPERFAMILY 1.75 HMM library and genome assignments server

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Leucine zipper domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Coiled coil proteins [ 57942] (7)
Fold:   Parallel coiled-coil [ 57943] (34)
Superfamily:   Leucine zipper domain [ 57959]
Families:   Leucine zipper domain [ 57960] (16)


Superfamily statistics
Genomes (480) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 15,938 43,418 97
Proteins 15,887 43,270 97


Functional annotation
General category Regulation
Detailed category DNA-binding

Document:
Function annotation of SCOP domain superfamilies

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0.006303Least InformativeInherited
Disease Ontology (DO)hematologic cancer0.0002538Moderately InformativeDirect

Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)cellular phenotype0.02587Least InformativeInherited
Mammalian Phenotype (MP)liver/biliary system phenotype0.06497Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cell death0.1069Moderately InformativeInherited
Mammalian Phenotype (MP)integument phenotype0.1076Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal liver physiology0.001317InformativeInherited
Mammalian Phenotype (MP)abnormal white adipose tissue morphology0.1078InformativeInherited
Mammalian Phenotype (MP)abnormal epidermal layer morphology0.2776InformativeInherited
Mammalian Phenotype (MP)abnormal bone ossification0.3099InformativeInherited
Mammalian Phenotype (MP)increased apoptosis0.6937InformativeInherited
Mammalian Phenotype (MP)abnormal adipose tissue amount0.8364InformativeInherited
Mammalian Phenotype (MP)thick epidermis0.0006893Highly InformativeDirect
Mammalian Phenotype (MP)hyperkeratosis0.005396Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism environmental stimulus response variant0.001389Least InformativeInherited
Worm Phenotype (WP)organism metabolism processing variant0.01237Least InformativeInherited
Worm Phenotype (WP)level of transgene expression variant0.00004542Moderately InformativeDirect
Worm Phenotype (WP)drug response variant0.03918Moderately InformativeInherited
Worm Phenotype (WP)transgene expression reduced0.00000006423InformativeDirect
Worm Phenotype (WP)organism pathogen response variant0.00586InformativeInherited
Worm Phenotype (WP)RNA expression variant0.0499InformativeInherited
Worm Phenotype (WP)pathogen susceptibility increased0.0007492Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)increased mortality0.0008521Least InformativeDirect
Fly Phenotype (FP)lethal0.5055Moderately InformativeInherited
Fly Phenotype (FP)lethal - all die before end of larval stage0.0005318InformativeDirect
Fly Phenotype (FP)developmental rate defective0.0006637Highly InformativeDirect

Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)adult0.203Least InformativeInherited
Fly Anatomy (FA)multi-tissue structure0.5853Least InformativeInherited
Fly Anatomy (FA)epithelium0.2994Moderately InformativeInherited
Fly Anatomy (FA)embryo0.3075Moderately InformativeInherited
Fly Anatomy (FA)adult heart0.0008824InformativeDirect
Fly Anatomy (FA)presumptive embryonic/larval system0.08496InformativeInherited
Fly Anatomy (FA)cuboidal/columnar epithelium0.1659InformativeInherited
Fly Anatomy (FA)embryonic epidermis0.02994Highly InformativeInherited

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)cell0.126Least InformativeInherited
Zebrafish Anatomy (ZA)hematopoietic cell0.04554InformativeInherited

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)root system0.1304Least InformativeInherited
Plant ANatomical entity (PAN)cardinal part of multi-tissue plant structure0.4504Least InformativeInherited
Plant ANatomical entity (PAN)root tip0.02467InformativeInherited
Plant ANatomical entity (PAN)primary root0.0007691Highly InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring groups other than amino-acyl groups0Moderately InformativeDirect
Enzyme Commission (EC)Histone acetyltransferase0InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 48 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Leucine zipper domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 48 hidden Markov models representing the Leucine zipper domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]