SUPERFAMILY 1.75 HMM library and genome assignments server

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Pumilio repeat family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   alpha-alpha superhelix [ 48370] (24)
Superfamily:   ARM repeat [ 48371] (23)
Family:   Pumilio repeat [ 63611]


Family statistics
Genomes (494) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 2,105 5,679 2
Proteins 2,094 5,641 2


Worm Phenotype (WP)

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show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell morphology variant0.0000381Least InformativeDirect
Worm Phenotype (WP)cell development variant0.00006408Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.000357Least InformativeDirect
Worm Phenotype (WP)blast cell physiology variant0.000357Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.05536Least InformativeInherited
Worm Phenotype (WP)germ cell development variant0.000007381Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.0001004Moderately InformativeDirect
Worm Phenotype (WP)organ system development variant0.0003747Moderately InformativeDirect
Worm Phenotype (WP)body region morphology variant0.03007Moderately InformativeInherited
Worm Phenotype (WP)organism segment morphology variant0.03007Moderately InformativeInherited
Worm Phenotype (WP)developmental morphology variant0.03017Moderately InformativeInherited
Worm Phenotype (WP)adult body morphology variant0.03027Moderately InformativeInherited
Worm Phenotype (WP)body morphology variant0.0319Moderately InformativeInherited
Worm Phenotype (WP)protein expression variant0.04226Moderately InformativeInherited
Worm Phenotype (WP)cell organization biogenesis variant0.04382Moderately InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.04596Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.0942Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.5746Moderately InformativeInherited
Worm Phenotype (WP)oocyte morphology variant0.0000006294InformativeDirect
Worm Phenotype (WP)nuclear positioning variant0.000002063InformativeDirect
Worm Phenotype (WP)cytokinesis variant emb0.00001172InformativeDirect
Worm Phenotype (WP)embryonic cell organization biogenesis variant0.00004838InformativeDirect
Worm Phenotype (WP)endocytic transport defect0.0002555InformativeDirect
Worm Phenotype (WP)cell number increased0.0007889InformativeDirect
Worm Phenotype (WP)oocyte physiology variant0.002823InformativeInherited
Worm Phenotype (WP)nuclear appearance variant0.0135InformativeInherited
Worm Phenotype (WP)cell fate specification variant0.01695InformativeInherited
Worm Phenotype (WP)pattern protein expression variant0.05382InformativeInherited
Worm Phenotype (WP)vulva development variant0.1139InformativeInherited
Worm Phenotype (WP)embryonic arrest0.00000002047Highly InformativeDirect
Worm Phenotype (WP)multiple nuclei0.0000007921Highly InformativeDirect
Worm Phenotype (WP)hatching variant0.00001048Highly InformativeDirect
Worm Phenotype (WP)multivulva0.0000926Highly InformativeDirect
Worm Phenotype (WP)no oocytes0.0003118Highly InformativeDirect
Worm Phenotype (WP)pronucleus centrosomes defective early emb0.001391Highly InformativeInherited
Worm Phenotype (WP)nuclear appearance number defective early emb0.001437Highly InformativeInherited
Worm Phenotype (WP)nucleus defective early emb0.001437Highly InformativeInherited
Worm Phenotype (WP)pronuclear morphology defective early emb0.001437Highly InformativeInherited
Worm Phenotype (WP)pronuclear nuclear appearance defective early emb0.001581Highly InformativeInherited
Worm Phenotype (WP)nuclear morphology variation early emb0.001737Highly InformativeInherited

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo0Least InformativeDirect
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)anatomical cluster0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)brain0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)alimentary system0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)testis0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)viscus0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)endomesoderm0InformativeDirect
Xenopus DEvelopment stage (XDE)unspecified stage0Moderately InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 75 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a ARM repeat domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]