SUPERFAMILY 1.75 HMM library and genome assignments server

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Skp1 dimerisation domain-like family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Skp1 dimerisation domain-like [ 81384]
Superfamily:   Skp1 dimerisation domain-like [ 81382]
Family:   Skp1 dimerisation domain-like [ 81380] (2)


Family statistics
Genomes (468) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 1,019 2,481 5
Proteins 1,019 2,471 5


Worm Phenotype (WP)

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show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)larval arrest0Least InformativeDirect
Worm Phenotype (WP)cell development variant0Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.00000000008564Least InformativeDirect
Worm Phenotype (WP)organism environmental stimulus response variant0.00003664Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.9255Least InformativeInherited
Worm Phenotype (WP)body region morphology variant0Moderately InformativeDirect
Worm Phenotype (WP)organism segment morphology variant0Moderately InformativeDirect
Worm Phenotype (WP)germ cell differentiation variant6.263e-16Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.000000000000002504Moderately InformativeDirect
Worm Phenotype (WP)cell organization biogenesis variant0.000000000000004067Moderately InformativeDirect
Worm Phenotype (WP)germ cell development variant0.0000000000006288Moderately InformativeDirect
Worm Phenotype (WP)chemical response variant0.000000001677Moderately InformativeDirect
Worm Phenotype (WP)cell cycle variant0.00000005216Moderately InformativeDirect
Worm Phenotype (WP)cell death variant0.00001154Moderately InformativeDirect
Worm Phenotype (WP)cell division variant0.00001608Moderately InformativeDirect
Worm Phenotype (WP)protein protein interaction variant0.03524Moderately InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant1Moderately InformativeInherited
Worm Phenotype (WP)embryonic cell organization biogenesis variant0InformativeDirect
Worm Phenotype (WP)accumulated germline cell corpses0InformativeDirect
Worm Phenotype (WP)cytoskeleton organization biogenesis variant0InformativeDirect
Worm Phenotype (WP)chemical hypersensitive0InformativeDirect
Worm Phenotype (WP)pachytene progression during oogenesis variant0InformativeDirect
Worm Phenotype (WP)meiotic chromosome organization variant0InformativeDirect
Worm Phenotype (WP)cell migration variant0.0000000005097InformativeDirect
Worm Phenotype (WP)early larval arrest0Highly InformativeDirect
Worm Phenotype (WP)cell proliferation increased0Highly InformativeDirect
Worm Phenotype (WP)apoptosis increased0Highly InformativeDirect
Worm Phenotype (WP)spindle position orientation defective early emb0Highly InformativeDirect
Worm Phenotype (WP)cytoplasmic appearance defective early emb0Highly InformativeDirect
Worm Phenotype (WP)embryonic arrest0Highly InformativeDirect
Worm Phenotype (WP)X chromosome nondisjunction0.00001311Highly InformativeDirect
Worm Phenotype (WP)protein aggregation induced paralysis1Highly InformativeInherited

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)root1Least InformativeInherited
Plant ANatomical entity (PAN)seed1Least InformativeInherited
Plant ANatomical entity (PAN)fruit0InformativeDirect
Plant ANatomical entity (PAN)primary root0.00005474Highly InformativeDirect
Plant structure DEvelopment stage (PDE)seedling development stage0.000001001InformativeDirect

Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Fly Phenotype (FP) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Skp1 dimerisation domain-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Fly Phenotype (FP) · Arabidopsis Plant Ontology (AP) · Internal database links ]