SUPERFAMILY 1.75 HMM library and genome assignments server

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Cysteine-rich DNA binding domain, (DM domain) family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   Cysteine-rich DNA binding domain, (DM domain) [ 82926]
Superfamily:   Cysteine-rich DNA binding domain, (DM domain) [ 82927]
Family:   Cysteine-rich DNA binding domain, (DM domain) [ 82928]


Family statistics
Genomes (21) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 34 302 1
Proteins 34 302 1


Mouse Phenotype (MP)

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show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)endocrine/exocrine gland phenotype0.0477Least InformativeInherited
Mammalian Phenotype (MP)abnormal reproductive system morphology0.0005587Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal spermatogenesis0.004058InformativeInherited
Mammalian Phenotype (MP)abnormal testis morphology0.005742InformativeInherited
Mammalian Phenotype (MP)abnormal male meiosis0.00003887Highly InformativeDirect
Mammalian Phenotype (MP)abnormal seminiferous tubule morphology0.0009193Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell development variant0.3833Least InformativeInherited
Worm Phenotype (WP)body region morphology variant0.1566Moderately InformativeInherited
Worm Phenotype (WP)organism segment morphology variant0.1566Moderately InformativeInherited
Worm Phenotype (WP)developmental morphology variant0.1569Moderately InformativeInherited
Worm Phenotype (WP)adult body morphology variant0.1572Moderately InformativeInherited
Worm Phenotype (WP)body morphology variant0.1628Moderately InformativeInherited
Worm Phenotype (WP)tail morphology variant0.0001194InformativeDirect
Worm Phenotype (WP)male morphology variant0.0001451InformativeDirect
Worm Phenotype (WP)male tail morphology variant0.000007413Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)visible0Moderately InformativeDirect

Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)tagma0Least InformativeDirect
Fly Anatomy (FA)segment0Least InformativeDirect
Fly Anatomy (FA)adult0Least InformativeDirect
Fly Anatomy (FA)organ system subdivision0Least InformativeDirect
Fly Anatomy (FA)adult mesothoracic segment0Moderately InformativeDirect
Fly Anatomy (FA)adult integumentary system0Moderately InformativeDirect
Fly Anatomy (FA)appendage0Moderately InformativeDirect
Fly Anatomy (FA)tagmatic subdivision of integument0Moderately InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)portion of tissue0Moderately InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo0Least InformativeDirect
Xenopus ANatomical entity (XAN)nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)brain0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)embryonic structure0Moderately InformativeDirect

Document: XA annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Cysteine-rich DNA binding domain, (DM domain) domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Internal database links ]