SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Ran binding protein zinc finger-like family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   Rubredoxin-like [ 57769] (17)
Superfamily:   Ran binding protein zinc finger-like [ 90209]
Family:   Ran binding protein zinc finger-like [ 90210] (6)


Family statistics
Genomes (65) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 84 274 5
Proteins 84 274 5


Enzyme Commission (EC)

(
show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0.0000000001094Least InformativeDirect
Enzyme Commission (EC)Ubiquitinyl hydrolase 10InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0.747Least InformativeInherited
Disease Ontology (DO)nervous system cancer0.05131Moderately InformativeInherited
Disease Ontology (DO)cell type cancer0.8246Moderately InformativeInherited
Disease Ontology (DO)retinal cell cancer0.0005714InformativeDirect
Disease Ontology (DO)sarcoma0.0002618Highly InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of the digestive system0.03161Least InformativeInherited
Phenotypic Abnormality (PA)Neoplasm0.137Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the gastrointestinal tract0.4873Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of digestive system physiology0.5181Moderately InformativeInherited
Phenotypic Abnormality (PA)Neoplasm by histology0.00942InformativeInherited
Phenotypic Abnormality (PA)Functional abnormality of the gastrointestinal tract0.2945InformativeInherited
Phenotypic Abnormality (PA)Abnormal gastrointestinal motility0.00004291Highly InformativeDirect
Phenotypic Abnormality (PA)Sarcoma0.0008954Highly InformativeDirect

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)cellular phenotype0.02245Least InformativeInherited
Mammalian Phenotype (MP)hematopoietic system phenotype0.08686Least InformativeInherited
Mammalian Phenotype (MP)immune system phenotype0.09625Least InformativeInherited
Mammalian Phenotype (MP)mortality/aging0.4494Least InformativeInherited
Mammalian Phenotype (MP)abnormal B cell morphology0.0001851Moderately InformativeDirect
Mammalian Phenotype (MP)decreased hematopoietic cell number0.00392Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal induced morbidity/mortality0.0238Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal professional antigen presenting cell morphology0.02476Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cell death0.06448Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal lymphocyte cell number0.1473Moderately InformativeInherited
Mammalian Phenotype (MP)decreased B cell number0.00001739InformativeDirect
Mammalian Phenotype (MP)abnormal B-1 B cell number0.0006206InformativeDirect
Mammalian Phenotype (MP)abnormal metabolism0.008293InformativeInherited
Mammalian Phenotype (MP)abnormal mature B cell number0.5323InformativeInherited
Mammalian Phenotype (MP)increased mortality induced by ionizing radiation0.000001002Highly InformativeDirect
Mammalian Phenotype (MP)abnormal cell nucleus morphology0.0001603Highly InformativeDirect
Mammalian Phenotype (MP)decreased mature B cell number0.3839Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)slow growth0Least InformativeDirect
Worm Phenotype (WP)larval lethal0Least InformativeDirect
Worm Phenotype (WP)larval arrest0Least InformativeDirect
Worm Phenotype (WP)sterile progeny0Least InformativeDirect

Document: WP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details) Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferases0.003642Least InformativeInherited
Enzyme Commission (EC)Hydrolases0.08969Least InformativeInherited
Enzyme Commission (EC)Acyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Acting on peptide bonds (peptidases)0.0000003159Moderately InformativeDirect
Enzyme Commission (EC)Lyases0.4238Moderately InformativeInherited
Enzyme Commission (EC)Aminoacyltransferases0InformativeDirect
Enzyme Commission (EC)Ubiquitinyl hydrolase 10Highly InformativeDirect
Enzyme Commission (EC)Other carbon-oxygen lyases0.000002813Highly InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 10 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Ran binding protein zinc finger-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]